wiki:net.sf.basedb.reggie

Version 258 (modified by Nicklas Nordborg, 8 hours ago) ( diff )

Released Reggie 5.4.1

Reggie extension for BASE

This package is an extension package to BASE that makes it easier to register biosources and samples.

Documentation

License

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Version Revision Date Binary (tar.gz) BASE Version Special notes
5.4.1 7967 November 21, 2024 reggie-5.4.1.tar.gz​ (7.6MB) 3.20 or later changelog
5.4 7920 November 4, 2024 reggie-5.4.tar.gz​ (7.6MB) 3.20 or later changelog
5.3.1 7873 October 8, 2024 reggie-5.3.1.tar.gz​ (7.6MB) 3.19.12 or later changelog
5.3 7866 September 27, 2024 reggie-5.3.tar.gz​ (7.6MB) 3.19.12 or later changelog
5.2.1 7852 September 23, 2024 reggie-5.2.1.tar.gz​ (7.6MB) 3.19.12 or later changelog
5.2 7846 September 19, 2024 reggie-5.2.tar.gz​ (7.6MB) 3.19.12 or later changelog
5.1.1 7801 July 1, 2024 reggie-5.1.1.tar.gz​ (7.4MB) 3.19.12 or later changelog
5.1 7796 July 1, 2024 reggie-5.1.tar.gz​ (7.4MB) 3.19.12 or later changelog
5.0.2 7779 June 19, 2024 reggie-5.0.2.tar.gz​ (7.4MB) 3.19.12 or later changelog
5.0.1 7755 June 13, 2024 reggie-5.0.1.tar.gz​ (7.4MB) 3.19.11 or later changelog
5.0 7734 June 3, 2024 reggie-5.0.tar.gz​ (7.4MB) 3.19.11 or later changelog
4.54 7691 May 6, 2024 reggie-4.54.tar.gz​ (7.4MB) 3.19.10 or later changelog
4.53.1 7634 April 4, 2024 reggie-4.53.1.tar.gz​ (7.4MB) 3.19.10 or later changelog
4.53 7589 February 20, 2024 reggie-4.53.tar.gz​ (7.4MB) 3.19.10 or later changelog
4.52.2 7578 February 12, 2024 reggie-4.52.2.tar.gz​ (7.4MB) 3.19.10 or later changelog
4.52.1 7566 February 2, 2024 reggie-4.52.1.tar.gz​ (7.4MB) 3.19.10 or later changelog
4.52 7559 January 31, 2024 reggie-4.52.tar.gz​ (7.4MB) 3.19.10 or later changelog
4.51 7528 January 9, 2024 reggie-4.51.tar.gz​ (7.3MB) 3.19.10 or later update notes changelog
4.50.1 7452 November 22, 2023 reggie-4.50.1.tar.gz​ (7.3MB) 3.19.10 or later changelog
4.50 7445 November 20, 2023 reggie-4.50.tar.gz​ (7.3MB) 3.19.10 or later update notes changelog
4.49.5 7431 November 15, 2023 reggie-4.49.5.tar.gz​ (7.2MB) 3.19.10 or later changelog
4.49.4 7404 November 8, 2023 reggie-4.49.4.tar.gz​ (7.2MB) 3.19.10 or later changelog
4.49.3 7371 October 6, 2023 reggie-4.49.3.tar.gz​ (7.2MB) 3.19.10 or later changelog
4.49.2 7344 September 11, 2023 reggie-4.49.2.tar.gz​ (7.2MB) 3.19.9 or later changelog
4.49.1 7340 September 11, 2023 reggie-4.49.1.tar.gz​ (7.2MB) 3.19.9 or later changelog
4.49 7316 August 29, 2023 reggie-4.49.tar.gz​ (7.2MB) 3.19.9 or later changelog
4.48.5 7285 August 15, 2023 reggie-4.48.5.tar.gz​ (7.2MB) 3.19.9 or later changelog
4.48.4 7260 June 16, 2023 reggie-4.48.4.tar.gz​ (7.2MB) 3.19.9 or later changelog
4.48.3 7255 June 13, 2023 reggie-4.48.3.tar.gz​ (7.2MB) 3.19.9 or later changelog
4.48.2 7250 June 8, 2023 reggie-4.48.2.tar.gz​ (7.2MB) 3.19.9 or later changelog
4.48.1 7245 June 7, 2023 reggie-4.48.1.tar.gz​ (7.2MB) 3.19.9 or later changelog
4.48 7236 June 7, 2023 removed due to critical bugs 3.19.9 or later changelog
4.47.1 7207 May 26, 2023 reggie-4.47.1.tar.gz​ (7.2MB) 3.19.8 or later changelog
4.47 7197 May 24, 2023 reggie-4.47.tar.gz​ (7.2MB) 3.19.8 or later changelog
4.46.1 7182 May 17, 2023 reggie-4.46.1.tar.gz​ (7.2MB) 3.19.8 or later changelog
4.46 7136 April 24, 2023 reggie-4.46.tar.gz​ (7.2MB) 3.19.8 or later changelog
4.45.2 7096 April 5, 2023 reggie-4.45.2.tar.gz​ (7.1MB) 3.19 or later changelog
4.45.1 7069 March 17, 2023 reggie-4.45.1.tar.gz​ (7.1MB) 3.19 or later changelog
4.45 7056 March 10, 2023 reggie-4.45.tar.gz​ (7.1MB) 3.19 or later changelog
4.44 7044 February 13, 2023 reggie-4.44.tar.gz​ (7.1MB) 3.19 or later changelog
4.43 7004 January 23, 2023 reggie-4.43.tar.gz​ (7.1MB) 3.19 or later changelog
4.42 6988 January 17, 2022 reggie-4.42.tar.gz​ (7.1MB) 3.19 or later changelog
4.41.4 6972 January 12, 2022 reggie-4.41.4.tar.gz​ (7.1MB) 3.19 or later changelog
4.41.3 6959 December 13, 2022 reggie-4.41.3.tar.gz​ (7.1MB) 3.19 or later changelog
4.41.2 6954 December 12, 2022 reggie-4.41.2.tar.gz​ (7.0MB) 3.19 or later changelog
4.41.1 6945 December 6, 2022 reggie-4.41.1.tar.gz​ (7.0MB) 3.19 or later changelog
4.41 6936 December 5, 2022 reggie-4.41.tar.gz​ (7.0MB) 3.19 or later changelog
4.40.2 6891 November 24, 2022 reggie-4.40.2.tar.gz​ (6.9MB) 3.19 or later changelog
4.40.1 6863 November 4, 2022 reggie-4.40.1.tar.gz​ (6.9MB) 3.19 or later changelog
4.40 6846 September 9, 2022 reggie-4.40.tar.gz​ (6.9MB) 3.19 or later update notes changelog
4.39.2 6834 September 5, 2022 reggie-4.39.2.tar.gz​ (6.9MB) 3.19 or later changelog
4.39.1 6800 August 11, 2022 reggie-4.39.1.tar.gz​ (6.9MB) 3.19 or later changelog
4.39 6773 June 10, 2022 reggie-4.39.tar.gz​ (6.9MB) 3.19 or later changelog
4.38 6697 April 25, 2022 reggie-4.38.tar.gz​ (6.9MB) 3.19 or later changelog
4.37.4 6652 March 22, 2022 reggie-4.37.4.tar.gz​ (6.8MB) 3.19 or later changelog
4.37.3 6645 March 17, 2022 reggie-4.37.3.tar.gz​ (6.8MB) 3.19 or later changelog
4.37.2 6621 March 3, 2022 reggie-4.37.2.tar.gz​ (6.8MB) 3.19 or later changelog
4.37.1 6609 February 25, 2022 reggie-4.37.1.tar.gz​ (6.8MB) 3.19 or later changelog
4.37 6601 February 22, 2022 reggie-4.37.tar.gz​ (6.8MB) 3.19 or later changelog
4.36 6586 February 12, 2022 reggie-4.36.tar.gz​ (6.8MB) 3.19 or later changelog
4.35 6567 February 1, 2022 reggie-4.35.tar.gz​ (6.8MB) 3.19 or later changelog
4.34.1 6564 February 1, 2022 reggie-4.34.1.tar.gz​ (6.8MB) 3.19 or later changelog
4.34 6519 December 8, 2021 reggie-4.34.tar.gz​ (6.8MB) 3.19 or later changelog
4.33.5 6509 December 3, 2021 reggie-4.33.5.tar.gz​ (6.8MB) 3.19 or later changelog
4.33.4 6473 November 4, 2021 reggie-4.33.4.tar.gz​ (6.8MB) 3.19 or later changelog
4.33.3 6448 October 20, 2021 reggie-4.33.3.tar.gz​ (6.8MB) 3.19 or later changelog
4.33.2 6439 October 11, 2021 reggie-4.33.2.tar.gz​ (6.8MB) 3.19 or later changelog
4.33.1 6435 October 7, 2021 reggie-4.33.1.tar.gz​ (6.8MB) 3.19 or later changelog
4.33 6427 September 29, 2021 reggie-4.33.tar.gz​ (6.8MB) 3.19 or later update notes changelog
4.32.1 6414 September 20, 2021 reggie-4.32.1.tar.gz​ (6.8MB) 3.19 or later changelog
4.32 6398 September 16, 2021 reggie-4.32.tar.gz​ (6.8MB) 3.19 or later update notes changelog
4.31.3 6324 June 14, 2021 reggie-4.31.3.tar.gz​ (6.6MB) 3.17 or later changelog
4.31.2 6275 June 3, 2021 reggie-4.31.2.tar.gz​ (6.6MB) 3.17 or later changelog
4.31.1 6258 May 26, 2021 reggie-4.31.1.tar.gz​ (6.6MB) 3.17 or later changelog
4.31 6126 February 12, 2021 reggie-4.31.tar.gz​ (6.6MB) 3.17 or later changelog
4.30 6103 January 18, 2021 reggie-4.30.tar.gz​ (6.6MB) 3.17 or later changelog
4.29 6096 December 15, 2020 reggie-4.29.tar.gz​ (6.6MB) 3.17 or later changelog
4.28 6089 November 26, 2020 reggie-4.28.tar.gz​ (5.9MB) 3.17 or later changelog
4.27.5 6014 September 29, 2020 reggie-4.27.5.tar.gz​ (4.8MB) 3.16 or later changelog
4.27.4 6009 September 18, 2020 reggie-4.27.4.tar.gz​ (4.8MB) 3.16 or later changelog
4.27.3 5972 June 24, 2020 reggie-4.27.3.tar.gz​ (4.8MB) 3.16 or later changelog
4.27.2 5966 June 9, 2020 reggie-4.27.2.tar.gz​ (4.8MB) 3.16 or later See #1252 changelog
4.27.1 5961 June 3, 2020 reggie-4.27.1.tar.gz​ (4.8MB) 3.16 or later changelog
4.27 5948 May 20, 2020 reggie-4.27.tar.gz​ (4.8MB) 3.16 or later update notes changelog
4.26.2 5914 April 22, 2020 reggie-4.26.2.tar.gz​ (4.8MB) 3.16 or later See #1238 changelog
4.26.1 5908 April 17, 2020 reggie-4.26.1.tar.gz​ (4.8MB) 3.16 or later changelog
4.26 5902 April 15, 2020 reggie-4.26.tar.gz​ (4.8MB) 3.16 or later update notes changelog
4.25.1 5860 March 11, 2020 reggie-4.25.1.tar.gz​ (4.7MB) 3.15.2 or later changelog
4.25 5820 February 4, 2020 reggie-4.25.tar.gz​ (4.7MB) 3.15.2 or later update notes changelog
4.24.1 5759 November 26, 2019 reggie-4.24.1.tar.gz​ (4.7MB) 3.15.2 or later changelog
4.24 5742 November 20, 2019 reggie-4.24.tar.gz​ (4.7MB) 3.15.2 or later changelog
4.23.2 5662 October 11, 2019 reggie-4.23.2.tar.gz​ (4.6MB) 3.15.2 or later changelog
4.23.1 5623 September 23, 2019 reggie-4.23.1.tar.gz​ (4.6MB) 3.15.2 or later changelog
4.23 5608 September 16, 2019 reggie-4.23.tar.gz​ (4.6MB) 3.15.2 or later update notes changelog
4.22.2 5411 May 9, 2019 reggie-4.22.2.tar.gz​ (18.6MB) 3.13 or later changelog
4.22.1 5368 April 16, 2019 reggie-4.22.1.tar.gz​ (18.6MB) 3.13 or later changelog
4.22 5348 April 3, 2019 reggie-4.22.tar.gz​ (18.6MB) 3.13 or 3.14 changelog
4.21 5282 February 6, 2019 reggie-4.21.tar.gz​ (6.3MB) 3.13 or later update notes changelog
4.20 5066 October 31, 2018 reggie-4.20.tar.gz​ (6.2MB) 3.13 or later changelog
4.19.1 4963 September 3, 2018 reggie-4.19.1.tar.gz​ (4.3MB) 3.13 or later changelog
4.19 4941 August 23, 2018 reggie-4.19.tar.gz​ (4.3MB) 3.13 or later changelog
4.18 4825 May 25, 2018 reggie-4.18.tar.gz​ (7.6MB) 3.11.3 or later changelog
4.17 4801 May 9, 2018 reggie-4.17.tar.gz​ (7.6MB) 3.11.3 or later changelog
4.16 4762 April 17, 2018 reggie-4.16.tar.gz​ (7.5MB) 3.11.3 or later update notes changelog
4.15 4683 February 22, 2018 reggie-4.15.tar.gz​ (7.5MB) 3.11.3 or later update notes changelog
4.14 4654 January 18, 2018 reggie-4.14.tar.gz​ (7.5MB) 3.11 or later changelog
4.13 4636 November 25, 2017 reggie-4.13.tar.gz​ (7.5MB) 3.11 or later update notes changelog
4.12 4616 October 25, 2017 reggie-4.12.tar.gz​ (7.5MB) 3.11 or later update notes changelog
4.11.3 4606 October 3, 2017 reggie-4.11.3.tar.gz​ (7.4MB) 3.11 or later changelog
4.11.2 4581 September 20, 2017 reggie-4.11.2.tar.gz​ (7.4MB) 3.11 or later changelog
4.11.1 4564 August 29, 2017 reggie-4.11.1.tar.gz​ (7.4MB) 3.11 or later update notes changelog
4.10 4529 June 20, 2017 reggie-4.10.tar.gz​ (7.4MB) 3.11 or later update notes changelog
4.9.4 4495 May 10, 2017 reggie-4.9.4.tar.gz​ (7.4MB) 3.10 or later changelog
4.9.3 4425 March 27, 2017 reggie-4.9.3.tar.gz​ (7.4MB) 3.10 or later changelog
4.9.2 4376 March 2, 2017 reggie-4.9.2.tar.gz​ (7.4MB) 3.10 or later changelog
4.9.1 4358 February 15, 2017 reggie-4.9.1.tar.gz​ (7.4MB) 3.10 or later changelog
4.9 4332 February 1, 2017 reggie-4.9.tar.gz​ (7.4MB) 3.10 or later update notes changelog
4.8 4209 November 7, 2016 reggie-4.8.tar.gz​ (8.1MB) 3.9.1 or later changelog
4.7.1 4140 September 30, 2016 reggie-4.7.1.tar.gz​ (8.1MB) 3.9.1 or later changelog
4.7 4119 September 21, 2016 reggie-4.7.tar.gz​ (8.1MB) 3.9.1 or later update notes changelog
4.6 4055 August 23, 2016 reggie-4.6.tar.gz​ (8.1MB) 3.9.1 or later update notes changelog
4.5 3984 June 9, 2016 reggie-4.5.tar.gz​ (7.6MB) 3.9 or later changelog
4.4 3930 May 12, 2016 reggie-4.4.tar.gz​ (7.6MB) 3.8 or later changelog
4.3.1 3866 April 22, 2016 reggie-4.3.1.tar.gz​ (7.6MB) 3.7 or later changelog
4.3 3852 April 14, 2016 reggie-4.3.tar.gz​ (7.6MB) 3.7 or later update notes changelog
4.2.1 3808 March 22, 2016 reggie-4.2.1.tar.gz​ (7.5MB) 3.7 or later changelog
4.2 3775 March 7, 2016 reggie-4.2.tar.gz​ (7.5MB) 3.7 or later changelog
4.1.1 3751 February 17, 2016 reggie-4.1.1.tar.gz​ (7.5MB) 3.7 or later changelog
4.1 3745 February 12, 2016 reggie-4.1.tar.gz​ (7.5MB) 3.7 or later update notes changelog
4.0 3689 January 13, 2016 reggie-4.0.tar.gz​ (7.3MB) 3.6 or later update notes changelog
3.7.1 3580 November 6, 2015 reggie-3.7.1.tar.gz​ (7.3MB) 3.5 or later changelog
3.7 3568 October 29, 2015 reggie-3.7.tar.gz​ (7.3MB) 3.5 or later changelog
3.6.1 3494 September 18, 2015 reggie-3.6.1.tar.gz​ (4.0MB) 3.5 or later changelog
3.6 3490 September 17, 2015 reggie-3.6.tar.gz​ (4.0MB) 3.5 or later changelog
3.5 3475 August 28, 2015 reggie-3.5.tar.gz​ (4.0MB) 3.5 or later update notes changelog
3.4 3377 June 9, 2015 reggie-3.4.tar.gz​ (3.8MB) 3.5 or later update notes changelog
3.3.3 3341 May 19, 2015 reggie-3.3.3.tar.gz​ (3.7MB) 3.5 or later changelog
3.3.2 3306 May 5, 2015 reggie-3.3.2.tar.gz​ (3.7MB) 3.5 or later changelog
3.3.1 3281 April 29, 2015 reggie-3.3.1.tar.gz​ (3.7MB) 3.5 or later changelog
3.3 3260 April 21, 2015 reggie-3.3.tar.gz​ (3.7MB) 3.5 or later changelog
3.2.2 3243 April 13, 2015 reggie-3.2.2.tar.gz​ (3.7MB) 3.4.* changelog
3.2.1 3197 March 19, 2015 reggie-3.2.1.tar.gz​ (3.7MB) 3.4.* changelog
3.2 3173 March 6, 2015 reggie-3.2.tar.gz​ (3.7MB) 3.4.* update notes changelog
3.1 3131 February 10, 2015 reggie-3.1.tar.gz​ (3.7MB) 3.4.0 or later changelog
3.0 3097 January 19, 2015 reggie-3.0.tar.gz​ (3.7MB) 3.4.0 or later changelog
2.18.2 3064 January 7, 2015 reggie-2.18.2.tar.gz​ (3.6MB) 3.3.3 or later changelog
2.18.1 3038 December 15, 2014 reggie-2.18.1.tar.gz​ (3.6MB) 3.3.3 or later changelog
2.18 3003 December 4, 2014 reggie-2.18.tar.gz​ (3.6MB) 3.3.3 or later changelog
2.17.2 2958 November 19, 2014 reggie-2.17.2.tar.gz​ (1.2MB) 3.3.3 or later changelog
2.17.1 2941 November 17, 2014 reggie-2.17.1.tar.gz​ (1.2MB) 3.3.3 or later changelog
2.17 2889 November 3, 2014 reggie-2.17.tar.gz​ (1.2MB) 3.3.2 or later update notes changelog
2.16.3 2823 October 16, 2014 reggie-2.16.3.tar.gz​ (1.2MB) 3.3.1 or later changelog
2.16.2 2817 October 16, 2014 reggie-2.16.2.tar.gz​ (1.2MB) 3.3.1 or later changelog
2.16.1 2799 October 13, 2014 reggie-2.16.1.tar.gz​ (1.1MB) 3.3.1 or later changelog
2.16 2734 October 6, 2014 reggie-2.16.tar.gz​ (1.1MB) 3.3.1 or later update notes changelog
2.15.3 2508 June 16, 2014 reggie-2.15.3.tar.gz​ (713kB) 3.2.2 or later changelog
2.15.2 2452 May 23, 2014 reggie-2.15.2.tar.gz​ (709kB) 3.2.2 or later update notes changelog
2.15.1 2410 May 9, 2014 reggie-2.15.1.tar.gz​ (706kB) 3.2.2 or later update notes changelog
2.15 2339 April 9, 2014 reggie-2.15.tar.gz​ (705kB) 3.2.2 or later update notes changelog
2.14 2192 January 13, 2014 reggie-2.14.tar.gz​ (657kB) 3.2.2 or later update notes changelog
2.13 2146 November 19, 2013 reggie-2.13.tar.gz​ (616kB) 3.2.2 or later update notes changelog
2.12 2018 September 9, 2013 reggie-2.12.tar.gz​ (532kB) 3.2.2 or later changelog
2.11.1 1879 February 22, 2013 reggie-2.11.1.tar.gz​ (349kB) 3.2.0 or later changelog
2.11 1862 February 19, 2013 reggie-2.11.tar.gz​ (348kB) 3.2.0 or later changelog
2.10.2 1798 January 9, 2013 reggie-2.10.2.tar.gz​ (294kB) 3.2.0 or later changelog
2.10.1 1786 December 13, 2012 reggie-2.10.1.tar.gz​ (294kB) 3.2.0 or later changelog
2.10 1780 December 12, 2012 reggie-2.10.tar.gz​ (293kB) 3.2.0 or later update notes changelog
2.9 1753 November 28, 2012 reggie-2.9.tar.gz​ (313kB) 3.1.0 or later update notes changelog
2.8 1724 September 24, 2012 reggie-2.8.tar.gz​ (273kB) 3.1.0 or later changelog
2.7 1714 August 30, 2012 reggie-2.7.tar.gz​ (272kB) 3.1.0 or later update notes changelog
2.6 1664 May 22, 2012 reggie-2.6.tar.gz​ (246kB) 3.1.0 or later changelog
2.5 1632 April 27, 2012 reggie-2.5.tar.gz​ (212kB) 3.1.0 or later update notes changelog
2.4 1618 April 25, 2012 reggie-2.4.tar.gz​ (193kB) 3.0.0 or later changelog
2.3 1535 February 14, 2012 reggie-2.3.tar.gz​ (124kB) 3.0.0 or later changelog
2.2 1528 January 25, 2012 reggie-2.2.tar.gz​ (122kB) 3.0.0 or later changelog
2.1 1506 January 18, 2012 reggie-2.1.tar.gz​ (102kB) 3.0.0 or later changelog
2.0.1 1486 November 30, 2011 reggie-2.0.1.tar.gz​ (89kB) 3.0.0 or later changelog
2.0 1465 November 14, 2011 reggie-2.0.tar.gz​ (89kB) 3.0.0 or later changelog
1.6 1462 November 14, 2011 reggie-1.6.tar.gz​ (85kB) 2.17.1 or later changelog
1.5 1377 June 17, 2011 reggie-1.5.tar.gz​ (66kB) 2.17.1 or later changelog
1.4 1364 May 16, 2011 reggie-1.4.tar.gz​ (58kB) 2.17.1 or later changelog
1.3 1356 April 28, 2011 reggie-1.3.tar.gz​ (72kB) 2.16.0 or later changelog
1.2 1339 April 11, 2011 reggie-1.2.tar.gz​ (63kB) 2.16.0 or later changelog
1.1 1323 March 21, 2011 reggie-1.1.tar.gz​ (43kB) 2.16.0 or later changelog
1.0 1314 March 7, 2011 reggie-1.0.tar.gz​ (42kB) 2.16.0 or later changelog

The latest development (maybe unstable; do not use on a production server) revision can be checked out from the repository using the following command:

svn co https://baseplugins.thep.lu.se/svn/extensions/net.sf.basedb.reggie/trunk reggie-devel

Contribute

After making modifications to the source code, compose a clear and concise log message to describe those changes and the reasons for them. Then, send an email to the developers list containing your log message and the output of svn diff (from the top of your subversion working copy). If the community members consider your changes acceptable, someone who has commit privileges will add your changes to the public source code tree. Recall that permission to directly commit changes to the repository is granted on merit - if you demonstrate comprehension of subversion, programming competency, and a team spirit, you will likely be awarded that permission.

Todo

#413
Handle re-running a sample on Caliper with Hi-Sense option
#510
Consistent use of terms in the lab protocols and Reggie interface
#532
reggie QC wizard for additional QC measurements outside of routine
#584
Make it possible to use different volumes for different RNA in Create mRNA plate wizard
#695
New reporter annotations
#752
Schedule new RNAQC from Flagged RNA wizard
#919
Include information about deliverd reports in case summary
#1211
Release exporter changes due to TMA specimen importer
#1311
Changes in frozen tissue importer due to changes in referral forms
#1623
Implement WGS structural variant calling pipeline
#1624
Mutational signatures

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