Timeline



Apr 11, 2024:

1:59 PM Ticket #1582 (Add support for searching among imputed genotypes) updated by Nicklas Nordborg
In 7651: […]
1:59 PM Changeset [7651] by Nicklas Nordborg
References #1582: Add support for searching among imputed genotypes …
9:40 AM Ticket #1573 (Update default configuration to match changes) updated by Nicklas Nordborg
In 7650: […]
9:40 AM Changeset [7650] by Nicklas Nordborg
References #1573: Improve release exporter scripts Fixes some minor …
9:39 AM Ticket #1573 (Update default configuration to match changes) updated by Nicklas Nordborg
In 7649: […]
9:39 AM Changeset [7649] by Nicklas Nordborg
References #1573: Improve release exporter scripts Added support for …
8:28 AM Ticket #1573 (Update default configuration to match changes) updated by Nicklas Nordborg
In 7648: […]
8:28 AM Changeset [7648] by Nicklas Nordborg
References #1573: Improve release exporter scripts Added …

Apr 10, 2024:

10:49 AM Ticket #1573 (Update default configuration to match changes) updated by Nicklas Nordborg
In 7647: […]
10:49 AM Changeset [7647] by Nicklas Nordborg
References #1573: Improve release exporter scripts Modified the …
8:01 AM Ticket #1583 (Improve release exporter scripts) created by Nicklas Nordborg
The data release procedure include a lot of manual steps to make sure …

Apr 9, 2024:

8:30 AM Ticket #1575 (Impute genotypes from OncoArray data) updated by Nicklas Nordborg
In 7646: […]
8:30 AM Changeset [7646] by Nicklas Nordborg
References #1575: Impute genotypes from OncoArray data Added an …

Apr 8, 2024:

1:40 PM Ticket #1582 (Add support for searching among imputed genotypes) created by Nicklas Nordborg
Reggie is implementing an imputation pipeline that will provide …
1:32 PM Ticket #1581 (Convert all raw bioassay items to derived bioassays) created by Nicklas Nordborg
The raw bioassay level is problematic since it doesn't allow us to …
1:05 PM Ticket #1575 (Impute genotypes from OncoArray data) updated by Nicklas Nordborg
In 7645: […]
1:05 PM Changeset [7645] by Nicklas Nordborg
References #1575: Impute genotypes from OncoArray data Changed the …
7:57 AM Changeset [7644] by Nicklas Nordborg
Changes for future release Relax 1.9
7:56 AM Milestone Relax v1.8 completed
See Relax extension page for more information.
7:56 AM net.sf.basedb.relax edited by Nicklas Nordborg
Released Relax 1.8 (diff)
7:55 AM relax-1.8.tar.gz attached to net.sf.basedb.relax by Nicklas Nordborg
Relax 1.8
7:50 AM Changeset [7643] by Nicklas Nordborg
Tagging Relax 1.8
7:49 AM Changeset [7642] by Nicklas Nordborg
Preparing to release Relax 1.8
7:48 AM Ticket #1580 (NullPointerException when importing an update release) closed by Nicklas Nordborg
fixed: In 7641: […]
7:48 AM Changeset [7641] by Nicklas Nordborg
Fixes #1580: NullPointerException when importing an update release
7:46 AM Ticket #1580 (NullPointerException when importing an update release) created by Nicklas Nordborg
[…] It seems to be related to the code that was added in #1547 to …

Apr 5, 2024:

8:50 AM Ticket #1576 (Calculate Polygenic Risk Scores (PRS)) updated by Nicklas Nordborg
In 7640: […]
8:50 AM Changeset [7640] by Nicklas Nordborg
References #1576: Calculate Polygenic Risk Scores (PRS) Implemented …
8:34 AM Ticket #1576 (Calculate Polygenic Risk Scores (PRS)) updated by Nicklas Nordborg
In 7639: […]
8:34 AM Changeset [7639] by Nicklas Nordborg
References #1576: Calculate Polygenic Risk Scores (PRS) The resulting …
7:36 AM Ticket #1579 (WGS FASTQ management wizard should use new API method for checking if ...) updated by Nicklas Nordborg
In 7638: […]
7:36 AM Changeset [7638] by Nicklas Nordborg
References #1579: WGS FASTQ management wizard should use new API …

Apr 4, 2024:

2:29 PM Ticket #1579 (WGS FASTQ management wizard should use new API method for checking if ...) updated by Nicklas Nordborg
Milestone changed
2:29 PM Ticket #1579 (WGS FASTQ management wizard should use new API method for checking if ...) closed by Nicklas Nordborg
fixed: In 7637: […]
2:29 PM Changeset [7637] by Nicklas Nordborg
Fixes #1579: WGS FASTQ management wizard should use new API method for …
2:22 PM Ticket #1578 (Implement a method for getting file metadata without opening a stream) closed by Nicklas Nordborg
fixed: In 7636: […]
2:21 PM Changeset [7636] by Nicklas Nordborg
Fixes #1578: Implement a method for getting file metadata without …
1:50 PM Ticket #1579 (WGS FASTQ management wizard should use new API method for checking if ...) created by Nicklas Nordborg
See #1578. The current method that opens a stream suffers from a …
1:13 PM Ticket #1578 (Implement a method for getting file metadata without opening a stream) created by Nicklas Nordborg
The RemoteSession class have several methods for downloading a file, …
11:19 AM Changeset [7635] by Nicklas Nordborg
Merge Reggie 4.53.1 to the trunk
11:13 AM Milestone Reggie v4.53.1 completed
Bug fixes and enhancements for Reggie 4.53. Revision Log: …
11:12 AM net.sf.basedb.reggie edited by Nicklas Nordborg
Released Reggie 4.53.1 (diff)
11:11 AM reggie-4.53.1.tar.gz attached to net.sf.basedb.reggie by Nicklas Nordborg
Reggie 4.53.1
11:10 AM Ticket #1574 (Improve the WGS FASTQ management wizards) closed by Nicklas Nordborg
fixed
11:09 AM Changeset [7634] by Nicklas Nordborg
Tagging Reggie 4.53.1
11:08 AM Changeset [7633] by Nicklas Nordborg
Preparing to release Reggie 4.53.1
9:09 AM Ticket #1577 (Release sync scripts for WGS data is written to wrong file server) closed by Nicklas Nordborg
fixed: In 7632: […]
9:09 AM Changeset [7632] by Nicklas Nordborg
Fixes #1577: Release sync scripts for WGS data is written to wrong …
9:02 AM Ticket #1577 (Release sync scripts for WGS data is written to wrong file server) created by Nicklas Nordborg
The Release exporter plug-in write three sync scripts for WGS data: …
8:22 AM Changeset [7631] by Nicklas Nordborg
Changes for future release Relax 1.8
8:20 AM Milestone Relax v1.7 completed
See Relax extension page for more information.
8:19 AM net.sf.basedb.relax edited by Nicklas Nordborg
(diff)
8:18 AM net.sf.basedb.relax edited by Nicklas Nordborg
Released Relax 1.7 (diff)
8:16 AM relax-1.7.tar.gz attached to net.sf.basedb.relax by Nicklas Nordborg
Relax 1.7
8:14 AM Changeset [7630] by Nicklas Nordborg
Tagging Relax 1.7
8:14 AM Changeset [7629] by Nicklas Nordborg
Preparing to release Relax 1.7
8:12 AM Ticket #1546 (Add support for file items on different file servers) closed by Nicklas Nordborg
fixed

Apr 3, 2024:

2:23 PM Ticket #1576 (Calculate Polygenic Risk Scores (PRS)) updated by Nicklas Nordborg
In 7628: […]
2:23 PM Changeset [7628] by Nicklas Nordborg
References #1576: Calculate Polygenic Risk Scores (PRS) Added a …
9:58 AM Ticket #1576 (Calculate Polygenic Risk Scores (PRS)) updated by Nicklas Nordborg
In 7627: […]
9:58 AM Changeset [7627] by Nicklas Nordborg
References #1576: Calculate Polygenic Risk Scores (PRS) The script …

Apr 2, 2024:

1:31 PM Ticket #1576 (Calculate Polygenic Risk Scores (PRS)) updated by Nicklas Nordborg
In 7626: […]
1:31 PM Changeset [7626] by Nicklas Nordborg
References #1576: Calculate Polygenic Risk Scores (PRS) Started to …
9:16 AM Ticket #1575 (Impute genotypes from OncoArray data) updated by Nicklas Nordborg
In 7625: […]
9:16 AM Changeset [7625] by Nicklas Nordborg
References #1575: Impute genotypes from OncoArray data We need to …
8:02 AM Ticket #1575 (Impute genotypes from OncoArray data) updated by Nicklas Nordborg
In 7624: […]
8:02 AM Changeset [7624] by Nicklas Nordborg
References #1575: Impute genotypes from OncoArray data The split step …

Mar 28, 2024:

1:37 PM Ticket #1576 (Calculate Polygenic Risk Scores (PRS)) updated by Nicklas Nordborg
In 7623: […]
1:37 PM Changeset [7623] by Nicklas Nordborg
References #1576: Calculate Polygenic Risk Scores (PRS) Added a …
1:24 PM Ticket #1576 (Calculate Polygenic Risk Scores (PRS)) updated by Nicklas Nordborg
In 7622: […]
1:24 PM Changeset [7622] by Nicklas Nordborg
References #1576: Calculate Polygenic Risk Scores (PRS) Added …
11:55 AM Ticket #1576 (Calculate Polygenic Risk Scores (PRS)) updated by Nicklas Nordborg
In 7621: […]
11:55 AM Changeset [7621] by Nicklas Nordborg
References #1576: Calculate Polygenic Risk Scores (PRS) Started to …
11:54 AM Ticket #1576 (Calculate Polygenic Risk Scores (PRS)) updated by Nicklas Nordborg
Description changed
11:53 AM Ticket #1576 (Calculate Polygenic Risk Scores (PRS)) updated by Nicklas Nordborg
Summary changed
9:10 AM Ticket #1575 (Impute genotypes from OncoArray data) updated by Nicklas Nordborg
In 7620: […]
9:10 AM Changeset [7620] by Nicklas Nordborg
References #1575: Impute genotypes from OncoArray data Update the …
7:52 AM Ticket #1575 (Impute genotypes from OncoArray data) updated by Nicklas Nordborg
In 7619: […]
7:52 AM Changeset [7619] by Nicklas Nordborg
References #1575: Impute genotypes from OncoArray data Fixes an issue …

Mar 26, 2024:

2:18 PM Ticket #1575 (Impute genotypes from OncoArray data) updated by Nicklas Nordborg
In 7618: […]
2:18 PM Changeset [7618] by Nicklas Nordborg
References #1575: Impute genotypes from OncoArray data Use multiple …
11:08 AM Ticket #1575 (Impute genotypes from OncoArray data) updated by Nicklas Nordborg
In 7617: […]
11:08 AM Changeset [7617] by Nicklas Nordborg
References #1575: Impute genotypes from OncoArray data Save result …
7:52 AM Ticket #1575 (Impute genotypes from OncoArray data) updated by Nicklas Nordborg
In 7616: […]
7:52 AM Changeset [7616] by Nicklas Nordborg
References #1575: Impute genotypes from OncoArray data Added two more …

Mar 25, 2024:

1:15 PM Ticket #1575 (Impute genotypes from OncoArray data) updated by Nicklas Nordborg
In 7615: […]
1:15 PM Changeset [7615] by Nicklas Nordborg
References #1575: Impute genotypes from OncoArray data Changed to …
1:05 PM Ticket #1575 (Impute genotypes from OncoArray data) updated by Nicklas Nordborg
In 7614: […]
1:05 PM Changeset [7614] by Nicklas Nordborg
References #1575: Impute genotypes from OncoArray data Changed our …

Mar 22, 2024:

2:33 PM Ticket #1575 (Impute genotypes from OncoArray data) updated by Nicklas Nordborg
In 7613: […]
2:33 PM Changeset [7613] by Nicklas Nordborg
References #1575: Impute genotypes from OncoArray data Updated the …
11:32 AM Ticket #1575 (Impute genotypes from OncoArray data) updated by Nicklas Nordborg
In 7612: […]
11:32 AM Changeset [7612] by Nicklas Nordborg
References #1575: Impute genotypes from OncoArray data Removed the …
10:59 AM Ticket #1575 (Impute genotypes from OncoArray data) updated by Nicklas Nordborg
In 7611: […]
10:59 AM Changeset [7611] by Nicklas Nordborg
References #1575: Impute genotypes from OncoArray data Updated the …
9:41 AM Ticket #1575 (Impute genotypes from OncoArray data) updated by Nicklas Nordborg
In 7610: […]
9:41 AM Changeset [7610] by Nicklas Nordborg
References #1575: Impute genotypes from OncoArray data Started to …
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