Opened 2 weeks ago
Last modified 6 hours ago
#1623 new task
Implement WGS structural variant calling pipeline
Reported by: | Nicklas Nordborg | Owned by: | Nicklas Nordborg |
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Priority: | major | Milestone: | Reggie v5.5 |
Component: | net.sf.basedb.reggie | Keywords: | |
Cc: |
Description
This should be similar to the existing WGS variant calling, but check for structural variants instead. gridss (https://github.com/PapenfussLab/gridss) is a possible candidate to use for the variant calling, but we probably need some post processing of the results as well.
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