Timeline



Mar 14, 2014:

3:03 PM Changeset [2293] by Nicklas Nordborg
References #533: Add secondary analysis section to Reggie Adding some …
12:29 PM Changeset [2292] by Nicklas Nordborg
References #533: Add secondary analysis section to Reggie Added SSHJ lib.
11:31 AM Changeset [2291] by Nicklas Nordborg
References #571: Update Reggie to new scripting pattern I think the …
10:29 AM Changeset [2290] by Nicklas Nordborg
References #578: Move to BASE 3.3 Set 3.3 as required BASE version. …
9:36 AM Milestone Web service examples 3.2 completed
A web services client example for BASE. For more information see …
9:36 AM net.sf.basedb.examples.webservices edited by Nicklas Nordborg
Note about web service support ending (diff)
9:32 AM Ticket #460 (Update Axis2) closed by Nicklas Nordborg
wontfix: Since web services are about to be removed from the BASE core (see …

Mar 13, 2014:

9:12 PM Changeset [2289] by Nicklas Nordborg
References #588: Update extensions to target Java 1.7 and BASE 3.3 …
9:12 PM Changeset [2288] by Nicklas Nordborg
References #588: Update extensions to target Java 1.7 and BASE 3.3 …
9:11 PM Changeset [2287] by Nicklas Nordborg
References #588: Update extensions to target Java 1.7 and BASE 3.3 …
9:10 PM Changeset [2286] by Nicklas Nordborg
References #588: Update extensions to target Java 1.7 and BASE 3.3 …
9:08 PM Changeset [2285] by Nicklas Nordborg
References #588: Update extensions to target Java 1.7 and BASE 3.3 …
9:07 PM Changeset [2284] by Nicklas Nordborg
References #588: Update extensions to target Java 1.7 and BASE 3.3 …
9:03 PM Changeset [2283] by Nicklas Nordborg
References #588: Update extensions to target Java 1.7 and BASE 3.3 …
8:59 PM Changeset [2282] by Nicklas Nordborg
References #588: Update extensions to target Java 1.7 and BASE 3.3 …
8:56 PM Changeset [2281] by Nicklas Nordborg
References #588: Update extensions to target Java 1.7 and BASE 3.3 …
8:50 PM Changeset [2280] by Nicklas Nordborg
References #588: Update extensions to target Java 1.7 and BASE 3.3 …
8:44 PM Ticket #588 (Update extensions to target Java 1.7 and BASE 3.3) created by Nicklas Nordborg
Some extensions have already made this move: * …

Mar 12, 2014:

8:47 AM Changeset [2279] by olle
Deleting erroneously created file.
8:47 AM Changeset [2278] by olle
Deleting erroneously created file.
8:11 AM Changeset [2277] by olle
8:10 AM Changeset [2276] by olle

Mar 7, 2014:

2:41 PM Changeset [2275] by Nicklas Nordborg
Adding 'sshj' library for connecting to servers with SSH. Added a …
2:27 PM Ticket #587 (Improve session timeout handling) closed by Nicklas Nordborg
fixed: (In [2274]) Fixes #587: Improve session timeout handling A really, …
2:27 PM Changeset [2274] by Nicklas Nordborg
Fixes #587: Improve session timeout handling A really, really big red …
2:23 PM Changeset [2273] by olle
2:22 PM Changeset [2272] by olle
2:22 PM Changeset [2271] by olle
2:14 PM Changeset [2270] by olle
Creating new net.sf.basedb.labenv extension repository.
1:40 PM Ticket #587 (Improve session timeout handling) created by Nicklas Nordborg
Some reggie wizards are protected against session timeout by a timer …
8:22 AM Changeset [2269] by Nicklas Nordborg
Creating a branch for playing around with SSH and sending files and …

Mar 5, 2014:

2:08 PM Changeset [2268] by Nicklas Nordborg
References #547: Start Demux and Merge Forgot this file in last …
12:58 PM Changeset [2267] by Nicklas Nordborg
References #547: Start Demux and Merge First prototype of the 'start …
11:48 AM Changeset [2266] by Nicklas Nordborg
Revert change from [2265] which was checked in by accident.
11:45 AM Changeset [2265] by Nicklas Nordborg

Mar 4, 2014:

10:44 AM Ticket #583 (Require 'embedding date' in 'Register paraffin blocks' wizard) closed by Nicklas Nordborg
fixed: (In [2264]) Fixes #583: Require 'embedding date' in 'Register paraffin …
10:44 AM Changeset [2264] by Nicklas Nordborg
Fixes #583: Require 'embedding date' in 'Register paraffin blocks' wizard
9:51 AM PluginDownload edited by Nicklas Nordborg
Adding YubiKey? extension to list (diff)
9:45 AM Changeset [2263] by Nicklas Nordborg
References #580: Authenticate users using YubiKey? sticks Updating README.
9:44 AM net.sf.basedb.yubikey/using edited by Nicklas Nordborg
More YubiKey? usage instructions (diff)
8:55 AM net.sf.basedb.yubikey/using created by Nicklas Nordborg
Adding use instructions for YubiKey? extension
8:44 AM net.sf.basedb.yubikey/install created by Nicklas Nordborg
Adding installation instructions for YubiKey? extension
8:35 AM net.sf.basedb.yubikey created by Nicklas Nordborg
Adding page for YubiKey? extension
8:21 AM Changeset [2262] by Nicklas Nordborg
Preparing Reggie trunk for 2.16 development.
8:18 AM Changeset [2261] by Nicklas Nordborg
Creating Reggie 2.15-stable branch.

Mar 3, 2014:

3:54 PM Changeset [2260] by Nicklas Nordborg
References #580: Authenticate users using YubiKey? sticks Restricting …
2:52 PM Ticket #586 (Register end date+time for clustering) created by Nicklas Nordborg
A new annotation that registers the end date+time for clustering a …
2:50 PM Ticket #585 (Cluster start date shold be a date+time annotation) created by Nicklas Nordborg
Since the data type of an annotation can't be changed some manual work …
2:23 PM Ticket #584 (Make it possible to use different volumes for different RNA in Create ...) created by Nicklas Nordborg
The wizard currently have one base quantity for RNA and one quantity …

Feb 28, 2014:

2:20 PM Changeset [2259] by Nicklas Nordborg
References #580: Authenticate users using YubiKey? sticks Added a …
11:02 AM Changeset [2258] by Nicklas Nordborg
References #580: Authenticate users using YubiKey? sticks Store …

Feb 27, 2014:

3:02 PM Changeset [2257] by Nicklas Nordborg
References #580: Authenticate users using YubiKey? sticks Implemented …
11:18 AM Changeset [2256] by Nicklas Nordborg
References #580: Authenticate users using YubiKey? sticks Adding …

Feb 26, 2014:

2:35 PM Ticket #583 (Require 'embedding date' in 'Register paraffin blocks' wizard) created by Nicklas Nordborg
The wizard currently allows the registration to proceed without an …
11:34 AM Changeset [2255] by Nicklas Nordborg
References #580: Authenticate users using YubiKey? sticks Updating …
11:04 AM net.sf.basedb.reggie edited by Nicklas Nordborg
Released Reggie 2.15-beta-2 (diff)
11:03 AM reggie-2.15-beta-2.tar.gz attached to net.sf.basedb.reggie by Nicklas Nordborg
Reggie 2.15-beta-2
11:02 AM Changeset [2254] by Nicklas Nordborg
Tagging Reggie 2.15-beta-2
11:02 AM Changeset [2253] by Nicklas Nordborg
Preparing to release Reggie 2.15-beta-2

Feb 25, 2014:

3:11 PM Changeset [2252] by Nicklas Nordborg
References #580: Authenticate users using YubiKey? sticks First …
2:39 PM Ticket #582 (Change 'LymfnodeRegional' to 'LymphnodeRegional' for 'SpecimenType' ...) closed by olle
fixed: Ticket closed as the requested changes have been added.
2:27 PM Changeset [2251] by olle
Refs #582. Specimen type annotation LymfnodeRegional for specimen …
12:43 PM Ticket #581 (Monthly operation list export should only include patients in region ...) closed by olle
fixed: Ticket closed since the requested changes have been added.
12:39 PM Changeset [2250] by olle
Refs #581. Monthly operation list export updated to only include …
11:01 AM Ticket #582 (Change 'LymfnodeRegional' to 'LymphnodeRegional' for 'SpecimenType' ...) created by Nicklas Nordborg
Need to change the installation wizard and the specimen tube …
9:54 AM Changeset [2249] by Nicklas Nordborg
References #580: Authenticate users using YubiKey? sticks Initial …

Feb 24, 2014:

4:17 PM Ticket #581 (Monthly operation list export should only include patients in region ...) created by olle
Monthly operation list export should only include patients in region …
3:31 PM Changeset [2248] by Nicklas Nordborg
Creating repository for YubiKey? extension.
3:28 PM Ticket #580 (Authenticate users using YubiKey sticks) created by Nicklas Nordborg
The idea is to use the YubiKey? one-time-password system for logging …
11:33 AM Ticket #579 (Store serial number of sequencers as annotations on hardware items) created by Nicklas Nordborg
And use this information in the 'Sequencing startup' wizard to …
11:30 AM Ticket #578 (Move to BASE 3.3) created by Nicklas Nordborg
BASE 3.3 will most likely be released before Reggie 2.16 and there are …
11:22 AM Ticket #575 (Add sequencing information to case summary) closed by Nicklas Nordborg
fixed
11:21 AM Ticket #546 (Confirm sequencing as completed) closed by Nicklas Nordborg
fixed
11:20 AM Ticket #545 (Register sequencing as ended) closed by Nicklas Nordborg
fixed
11:20 AM Ticket #562 (Re-design clustering and sequencing startup wizards) closed by Nicklas Nordborg
fixed
11:20 AM Ticket #577 (Flag histology items in HE glass/scoring wizard) closed by Nicklas Nordborg
fixed
11:20 AM Ticket #540 (Make sure Reggie works with BASE 3.3) closed by Nicklas Nordborg
fixed
11:16 AM reggie-2.15-beta-1.tar.gz attached to net.sf.basedb.reggie by Nicklas Nordborg
Reggie 2.15-beta-1
11:15 AM net.sf.basedb.reggie edited by Nicklas Nordborg
Released Reggie 2.15-beta-1 (diff)
11:13 AM Changeset [2247] by Nicklas Nordborg
Tagging Reggie 2.15-beta-1
11:12 AM Changeset [2246] by Nicklas Nordborg
Preparing to release Reggie 2.15-beta-1

Feb 21, 2014:

3:00 PM Changeset [2245] by Nicklas Nordborg
Resetting debug flag to prepare for next release.
2:58 PM Changeset [2244] by Nicklas Nordborg
References #577: Flag histology items in HE glass/scoring wizard …
1:42 PM Changeset [2243] by Nicklas Nordborg
References #577: Flag histology items in HE glass/scoring wizard The …
10:38 AM Changeset [2242] by Nicklas Nordborg
References #577: Flag histology items in HE glass/scoring wizard The …
8:59 AM Changeset [2241] by Nicklas Nordborg
References #562, #545 and #546. Only display pool name once if the …
8:54 AM Changeset [2240] by Nicklas Nordborg
Marking some wizards with 'not-implemented' to prepare for 2.15 …
8:50 AM Changeset [2239] by Nicklas Nordborg
References #562: Re-design clustering and sequencing startup wizards …

Feb 20, 2014:

2:44 PM Ticket #577 (Flag histology items in HE glass/scoring wizard) created by Nicklas Nordborg
There are currently a few cases where the embedding of a histology …
10:35 AM Changeset [2238] by Nicklas Nordborg
Fixes a potential NullPointerException due to checking the incorrect …
9:48 AM Changeset [2237] by Nicklas Nordborg
References #562: Re-design clustering and sequencing startup wizards …
8:57 AM Changeset [2236] by Nicklas Nordborg
References #545 and #546. Load and display information about pools and …

Feb 19, 2014:

3:39 PM Changeset [2235] by Nicklas Nordborg
References #546: Confirm sequencing as completed Adding an option to …
3:00 PM Ticket #576 (Error message container for case summary hidden behind tool bar) closed by olle
fixed: (In [2234]) Fixes #576. JSP script case_summary.jsp in …
3:00 PM Changeset [2234] by olle
Fixes #576. JSP script case_summary.jsp in …
2:52 PM Ticket #576 (Error message container for case summary hidden behind tool bar) created by olle
The error message container for case summary is hidden behind the tool …
1:27 PM Changeset [2233] by Nicklas Nordborg
References #545: Register sequencing as ended Avoid using 'failed' …

Feb 17, 2014:

3:30 PM Changeset [2232] by Nicklas Nordborg
References #575: Add sequencing information to case summary Include …
3:28 PM Ticket #575 (Add sequencing information to case summary) created by Nicklas Nordborg
10:03 AM Changeset [2231] by Nicklas Nordborg
References #562: Re-design clustering and sequencing startup wizards …
10:02 AM Changeset [2230] by Nicklas Nordborg
References #545: Register sequencing as ended Display sequencing …
10:01 AM Changeset [2229] by Nicklas Nordborg
References #546: Confirm sequencing as completed Display sequencing …

Feb 14, 2014:

2:45 PM net.sf.basedb.reggie/notes215 created by Nicklas Nordborg
Adding update notes for Reggie 2.15
1:47 PM Changeset [2228] by Nicklas Nordborg
References #546: Confirm sequencing as completed New version of the …
11:19 AM Ticket #572 (Use different barcode for pools from the same plate) closed by Nicklas Nordborg
fixed
11:18 AM Changeset [2227] by Nicklas Nordborg
References #562: Re-design clustering and sequencing startup wizards …

Feb 13, 2014:

1:44 PM Changeset [2226] by Nicklas Nordborg
References #546: Confirm sequencing as completed First version of …
8:44 AM Changeset [2225] by Nicklas Nordborg
References #533: Register sequencing as ended New version of the …

Feb 12, 2014:

11:09 AM Changeset [2224] by Nicklas Nordborg
References #562: Re-design clustering and sequencing startup wizards …
10:40 AM Ticket #574 (Missing data sample list export from consent and missing sample data ...) closed by olle
fixed: Ticket closed as the requested functionality has been added.
10:35 AM Changeset [2223] by olle
Refs #574. Refs #565. Refs #569. Consent and missing sample data …
8:59 AM Ticket #574 (Missing data sample list export from consent and missing sample data ...) created by olle
Missing data sample list export should be available from the consent …
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