wiki:net.sf.basedb.reggie

Version 103 (modified by Nicklas Nordborg, 9 years ago) ( diff )

Adding link to update notes

Reggie extension for BASE

This package is an extension package to BASE that makes it easier to register biosources and samples.

Documentation

License

Download

Version Revision Date Binary (tar.gz) BASE Version Special notes
3.5 3475 August 28, 2015 reggie-3.5.tar.gz (4.0MB) 3.5 or later update notes changelog
3.4 3377 June 9, 2015 reggie-3.4.tar.gz (3.8MB) 3.5 or later update notes changelog
3.3.3 3341 May 19, 2015 reggie-3.3.3.tar.gz (3.7MB) 3.5 or later changelog
3.3.2 3306 May 5, 2015 reggie-3.3.2.tar.gz (3.7MB) 3.5 or later changelog
3.3.1 3281 April 29, 2015 reggie-3.3.1.tar.gz (3.7MB) 3.5 or later changelog
3.3 3260 April 21, 2015 reggie-3.3.tar.gz (3.7MB) 3.5 or later changelog
3.2.2 3243 April 13, 2015 reggie-3.2.2.tar.gz (3.7MB) 3.4.* changelog
3.2.1 3197 March 19, 2015 reggie-3.2.1.tar.gz (3.7MB) 3.4.* changelog
3.2 3173 March 6, 2015 reggie-3.2.tar.gz (3.7MB) 3.4.* update notes changelog
3.1 3131 February 10, 2015 reggie-3.1.tar.gz (3.7MB) 3.4.0 or later changelog
3.0 3097 January 19, 2015 reggie-3.0.tar.gz (3.7MB) 3.4.0 or later changelog
2.18.2 3064 January 7, 2015 reggie-2.18.2.tar.gz (3.6MB) 3.3.3 or later changelog
2.18.1 3038 December 15, 2014 reggie-2.18.1.tar.gz (3.6MB) 3.3.3 or later changelog
2.18 3003 December 4, 2014 reggie-2.18.tar.gz (3.6MB) 3.3.3 or later changelog
2.17.2 2958 November 19, 2014 reggie-2.17.2.tar.gz (1.2MB) 3.3.3 or later changelog
2.17.1 2941 November 17, 2014 reggie-2.17.1.tar.gz (1.2MB) 3.3.3 or later changelog
2.17 2889 November 3, 2014 reggie-2.17.tar.gz (1.2MB) 3.3.2 or later update notes changelog
2.16.3 2823 October 16, 2014 reggie-2.16.3.tar.gz (1.2MB) 3.3.1 or later changelog
2.16.2 2817 October 16, 2014 reggie-2.16.2.tar.gz (1.2MB) 3.3.1 or later changelog
2.16.1 2799 October 13, 2014 reggie-2.16.1.tar.gz (1.1MB) 3.3.1 or later changelog
2.16 2734 October 6, 2014 reggie-2.16.tar.gz (1.1MB) 3.3.1 or later update notes changelog
2.15.3 2508 June 16, 2014 reggie-2.15.3.tar.gz (713kB) 3.2.2 or later changelog
2.15.2 2452 May 23, 2014 reggie-2.15.2.tar.gz (709kB) 3.2.2 or later update notes changelog
2.15.1 2410 May 9, 2014 reggie-2.15.1.tar.gz (706kB) 3.2.2 or later update notes changelog
2.15 2339 April 9, 2014 reggie-2.15.tar.gz (705kB) 3.2.2 or later update notes changelog
2.14 2192 January 13, 2014 reggie-2.14.tar.gz (657kB) 3.2.2 or later update notes changelog
2.13 2146 November 19, 2013 reggie-2.13.tar.gz (616kB) 3.2.2 or later update notes changelog
2.12 2018 September 9, 2013 reggie-2.12.tar.gz (532kB) 3.2.2 or later changelog
2.11.1 1879 February 22, 2013 reggie-2.11.1.tar.gz (349kB) 3.2.0 or later changelog
2.11 1862 February 19, 2013 reggie-2.11.tar.gz (348kB) 3.2.0 or later changelog
2.10.2 1798 January 9, 2013 reggie-2.10.2.tar.gz (294kB) 3.2.0 or later changelog
2.10.1 1786 December 13, 2012 reggie-2.10.1.tar.gz (294kB) 3.2.0 or later changelog
2.10 1780 December 12, 2012 reggie-2.10.tar.gz (293kB) 3.2.0 or later update notes changelog
2.9 1753 November 28, 2012 reggie-2.9.tar.gz (313kB) 3.1.0 or later update notes changelog
2.8 1724 September 24, 2012 reggie-2.8.tar.gz (273kB) 3.1.0 or later changelog
2.7 1714 August 30, 2012 reggie-2.7.tar.gz (272kB) 3.1.0 or later update notes changelog
2.6 1664 May 22, 2012 reggie-2.6.tar.gz (246kB) 3.1.0 or later changelog
2.5 1632 April 27, 2012 reggie-2.5.tar.gz (212kB) 3.1.0 or later update notes changelog
2.4 1618 April 25, 2012 reggie-2.4.tar.gz (193kB) 3.0.0 or later changelog
2.3 1535 February 14, 2012 reggie-2.3.tar.gz (124kB) 3.0.0 or later changelog
2.2 1528 January 25, 2012 reggie-2.2.tar.gz (122kB) 3.0.0 or later changelog
2.1 1506 January 18, 2012 reggie-2.1.tar.gz (102kB) 3.0.0 or later changelog
2.0.1 1486 November 30, 2011 reggie-2.0.1.tar.gz (89kB) 3.0.0 or later changelog
2.0 1465 November 14, 2011 reggie-2.0.tar.gz (89kB) 3.0.0 or later changelog
1.6 1462 November 14, 2011 reggie-1.6.tar.gz (85kB) 2.17.1 or later changelog
1.5 1377 June 17, 2011 reggie-1.5.tar.gz (66kB) 2.17.1 or later changelog
1.4 1364 May 16, 2011 reggie-1.4.tar.gz (58kB) 2.17.1 or later changelog
1.3 1356 April 28, 2011 reggie-1.3.tar.gz (72kB) 2.16.0 or later changelog
1.2 1339 April 11, 2011 reggie-1.2.tar.gz (63kB) 2.16.0 or later changelog
1.1 1323 March 21, 2011 reggie-1.1.tar.gz (43kB) 2.16.0 or later changelog
1.0 1314 March 7, 2011 reggie-1.0.tar.gz (42kB) 2.16.0 or later changelog

The latest development (maybe unstable; do not use on a production server) revision can be checked out from the repository using the following command:

svn co http://baseplugins.thep.lu.se/svn/extensions/net.sf.basedb.reggie/trunk reggie-devel

Contribute

After making modifications to the source code, compose a clear and concise log message to describe those changes and the reasons for them. Then, send an email to the developers list containing your log message and the output of svn diff (from the top of your subversion working copy). If the community members consider your changes acceptable, someone who has commit privileges will add your changes to the public source code tree. Recall that permission to directly commit changes to the repository is granted on merit - if you demonstrate comprehension of subversion, programming competency, and a team spirit, you will likely be awarded that permission.

Todo

#413
Handle re-running a sample on Caliper with Hi-Sense option
#510
Consistent use of terms in the lab protocols and Reggie interface
#532
reggie QC wizard for additional QC measurements outside of routine
#584
Make it possible to use different volumes for different RNA in Create mRNA plate wizard
#695
New reporter annotations
#752
Schedule new RNAQC from Flagged RNA wizard
#919
Include information about deliverd reports in case summary
#1211
Release exporter changes due to TMA specimen importer
#1311
Changes in frozen tissue importer due to changes in referral forms
#1623
Implement WGS structural variant calling pipeline
#1624
Mutational signatures

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