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May 5, 2015:

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8:25 AM Changeset [3307] by nicklas
Merge Reggie 3.3.2 to the trunk.
8:24 AM PluginDownload edited by nicklas
Released Reggie 3.3.2 (diff)
8:23 AM net.sf.basedb.reggie edited by nicklas
Released Reggie 3.3.2 (diff)
8:22 AM reggie-3.3.2.tar.gz attached to net.sf.basedb.reggie by nicklas
Reggie 3.3.2
8:20 AM Changeset [3306] by nicklas
Tagging Reggie 3.3.2
8:20 AM Milestone Reggie v3.3.2 completed
8:20 AM Changeset [3305] by nicklas
Preparing to release Reggie 3.3.2
8:17 AM Ticket #778 (Can't create manual pool when there is no plate waiting) closed by nicklas
fixed: (In [3304]) Fixes #778: Can't create manual pool when there is no …
8:17 AM Changeset [3304] by nicklas
Fixes #778: Can't create manual pool when there is no plate waiting …

May 4, 2015:

3:49 PM Ticket #778 (Can't create manual pool when there is no plate waiting) created by nicklas
The "Create manual pool" button is not available when starting the …
2:42 PM net.sf.basedb.reggie/notes34 created by nicklas
Preparing update notes for Reggie 3.4
2:33 PM Changeset [3303] by nicklas
References #764: Support for neoprep in the library preparation …
12:52 PM Changeset [3302] by nicklas
References #764: Support for neoprep in the library preparation …
10:37 AM Changeset [3301] by nicklas
References #764: Support for neoprep in the library preparation …
9:15 AM Changeset [3300] by nicklas
References #764: Support for neoprep in the library preparation Added …
8:32 AM Changeset [3299] by nicklas
References #764: Support for neoprep in the library preparation Fixes …

Apr 30, 2015:

2:42 PM Changeset [3298] by olle
Refs #777 Updates due to version number change to "1.3-dev". 1. …
2:36 PM Ticket #777 (MeLuDI v.1.2.3 bug fixes and improvements) created by olle
This ticket covers bug fixes and improvements to MeLuDI v.1.2.3.
2:33 PM Milestone MeLuDI v1.2.3 completed
Updates of the MeLuDI extension to BASE, a package of registration …
2:21 PM PluginDownload edited by olle
Added information on MeLuDI 1.2.3 (diff)
2:19 PM net.sf.basedb.meludi edited by olle
Changing the README link to tag 1.2.3 (diff)
2:17 PM net.sf.basedb.meludi edited by olle
Added information on MeLuDI 1.2.3 (diff)
2:12 PM Changeset [3297] by nicklas
References #764: Support for neoprep in the library preparation …
2:12 PM Changeset [3296] by olle
Creating MeLuDI tag 1.2.3
2:06 PM meludi-1.2.3.tar.gz attached to net.sf.basedb.meludi by olle
MeLuDI BASE extension package version 1.2.3
1:55 PM Changeset [3295] by olle
Refs #768. Java servlet class/file SpecimenTubeServlet.java in …
1:42 PM Ticket #768 (MeLuDI v.1.2.2 bug fixes and improvements) closed by olle
fixed: Ticket closed as MeLuDI version 1.2.3 has been created.
1:39 PM Changeset [3294] by olle
Refs #768. Updates due to version number change to "1.2.3". 1. …
1:32 PM Changeset [3293] by olle
Refs #768. MeLuDI updated in DNA/RNA extraction wizards and Lab …
11:51 AM Changeset [3292] by olle
Refs #768. MeLuDI updated when finding unprocessed specimen tubes to …
11:31 AM Changeset [3291] by olle
Refs #768. MeLuDI updated in Lab tracking sheet/report by removing …
10:56 AM Changeset [3290] by nicklas
References #764: Support for neoprep in the library preparation …
9:40 AM Changeset [3289] by nicklas
References #764: Support for neoprep in the library preparation Added …
9:08 AM Changeset [3288] by nicklas
References #764: Support for neoprep in the library preparation …
9:05 AM Changeset [3287] by olle
Refs #768. MeLuDI updated by fixing bugs regarding finding storage …
8:05 AM Ticket #776 (An old storage box position can be re-used for new specimens) created by nicklas
If a specimen located in position I9 of a box is scheduled for …

Apr 29, 2015:

2:52 PM Changeset [3286] by nicklas
References #764: Support for neoprep in the library preparation …
2:39 PM Changeset [3285] by olle
Refs #768. MeLuDI updated to not fill in gaps, when finding storage …
2:22 PM Changeset [3284] by nicklas
References #764: Support for neoprep in the library preparation …
11:58 AM Changeset [3283] by olle
Refs #768. MeLuDI updated in DNA/RNA registration/quantification …
11:58 AM Changeset [3282] by nicklas
Merging Reggie 3.3.1 to the trunk.
11:55 AM Milestone Reggie v3.3.1 completed
11:55 AM PluginDownload edited by nicklas
Released Reggie 3.3.1 (diff)
11:54 AM net.sf.basedb.reggie edited by nicklas
Released Reggie 3.3.1 (diff)
11:53 AM reggie-3.3.1.tar.gz attached to net.sf.basedb.reggie by nicklas
Reggie 3.3.1
11:53 AM Changeset [3281] by nicklas
Tagging Reggie 3.3.1
11:52 AM Changeset [3280] by nicklas
Preparing to release Reggie 3.3.1
11:50 AM Ticket #774 (Comment for bioplate in mRNA registration is not updated) closed by nicklas
fixed: (In [3279]) Fixes #774: Comment for bioplate in mRNA registration is …
11:50 AM Changeset [3279] by nicklas
Fixes #774: Comment for bioplate in mRNA registration is not updated
11:41 AM Ticket #775 (Histology scoring wizard does not work) closed by nicklas
fixed: (In [3278]) Fixes #775: Histology scoring wizard does not work …
11:41 AM Changeset [3278] by nicklas
Fixes #775: Histology scoring wizard does not work Removed the exta space.
11:26 AM Changeset [3277] by nicklas
Creating branch for Reggie 3.3.x bugfixes.
11:22 AM Ticket #775 (Histology scoring wizard does not work) created by nicklas
It is not possible to register scores in the Histology wizard. To …
9:45 AM Changeset [3276] by olle
Refs #768. MeLuDI updated to create DNA and RNA extract items for …

Apr 28, 2015:

11:28 AM Ticket #774 (Comment for bioplate in mRNA registration is not updated) created by nicklas
Seems like the bug in #713 also exists in the mRNA registration wizard.

Apr 24, 2015:

12:15 PM Changeset [3275] by olle
Refs #768. MeLuDI updated with bug fix in NanoDrop sample ID file …
10:05 AM Changeset [3274] by olle
Refs #768. MeLuDI updated by removal of annotation type …

Apr 23, 2015:

2:37 PM Changeset [3273] by nicklas
References #762: Pre-normalization changes due to NeoPrep? The mRNA …
1:56 PM Changeset [3272] by nicklas
References #773: The mRNA wizard must be smarter when auto-selecting …
12:46 PM Changeset [3271] by olle
Refs #768. MeLuDI updated in DNA/RNA registration/quantification …
11:56 AM Changeset [3270] by nicklas
References #773: The mRNA wizard must be smarter when auto-selecting …
9:18 AM Changeset [3269] by nicklas
References #762: Pre-normalization changes due to NeoPrep? Added new …
8:12 AM Changeset [3268] by olle
Refs #768. Bugs fixed in DNA/RNA registration/quantification wizard …

Apr 22, 2015:

11:56 AM Ticket #769 (Retraction wizard - Additions to Step 2: Follow up) closed by olle
fixed: Ticket closed since the desired functionality has been added.
11:43 AM Ticket #773 (The mRNA wizard must be smarter when auto-selecting pre-normalized RNA) created by nicklas
If the 'Pre-normalized RNA' option is selected in the auto-select …
9:11 AM Ticket #772 (New sample annotation (LinkedSpecimen) to highlight prior specimen) created by nicklas
The current SCANB BASE model permit a patient to have up to 2 cases …
9:03 AM Ticket #771 (Yellow label highlighting a representative specimen) created by nicklas
A new annotation named YellowLabel for samples of subtype Specimen. …
8:21 AM Ticket #763 (Change limit for NotEnoughRemaininQuantity flag in the extraction wizard) closed by nicklas
fixed: (In [3267]) Fixes #763: Change limit for NotEnoughRemaininQuantity?
8:21 AM Changeset [3267] by nicklas
Fixes #763: Change limit for NotEnoughRemaininQuantity? flag in the …

Apr 21, 2015:

2:57 PM Changeset [3266] by olle
Refs #769. Bug fix in Javascript file retraction_followup_form.js in …
2:44 PM Changeset [3265] by olle
Refs #769. Follow-up step of retraction wizard updated by addition of …
8:50 AM net.sf.basedb.print edited by nicklas
(diff)
8:50 AM PluginDownload edited by nicklas
Released Print package 1.3 (diff)
8:50 AM Changeset [3264] by nicklas
Preparing for future Print package 1.4
8:49 AM Milestone Print package v1.3 completed
See Print package extension page for more …
8:48 AM net.sf.basedb.print edited by nicklas
Released Print package 1.3 (diff)
8:47 AM base-print-1.3.tar.gz attached to net.sf.basedb.print by nicklas
Print package 1.3
8:47 AM Changeset [3263] by nicklas
Tagging Print extension 1.3
8:46 AM Changeset [3262] by nicklas
Preparing to release Print extension 1.3
8:45 AM Changeset [3261] by nicklas
Preparing for future release Reggie 3.4
8:43 AM Milestone Reggie v3.3 completed
See Reggie extension page for more information.
8:42 AM PluginDownload edited by nicklas
Released Reggie 3.3 (diff)
8:41 AM net.sf.basedb.reggie edited by nicklas
Released Reggie 3.5 (diff)
8:39 AM reggie-3.3.tar.gz attached to net.sf.basedb.reggie by nicklas
Reggie 3.3
8:38 AM Ticket #750 (Changes required for BASE version 3.5) closed by nicklas
fixed
8:37 AM Changeset [3260] by nicklas
Tagging Reggie 3.3
8:37 AM Changeset [3259] by nicklas
Preparing to release Reggie 3.3

Apr 20, 2015:

11:50 AM Ticket #770 (Retraction wizard - Step 3: Destruction) created by olle
Retraction wizard steps: 1. [Ticket #526] Marking extracts for …
11:22 AM Ticket #769 (Retraction wizard - Additions to Step 2: Follow up) created by olle
Retraction wizard steps: 1. [Ticket #526] Marking extracts for …

Apr 18, 2015:

12:17 PM Changeset [3258] by olle
Refs #768 Updates due to version number change to "1.3-dev". 1. …
12:11 PM Ticket #768 (MeLuDI v.1.2.2 bug fixes and improvements) created by olle
This ticket covers bug fixes and improvements to MeLuDI v.1.2.2.
12:08 PM Milestone MeLuDI v1.2.2 completed
Updates of the MeLuDI extension to BASE, a package of registration …
12:04 PM Ticket #767 (MeLuDI v.1.2.1 bug fixes and improvements) closed by olle
fixed: Ticket closed as MeLuDI version 1.2.2 has been created.
11:57 AM net.sf.basedb.meludi edited by olle
(diff)
11:57 AM PluginDownload edited by olle
Added information on MeLuDI 1.2.2 (diff)
11:46 AM meludi-1.2.2.tar.gz attached to net.sf.basedb.meludi by olle
MeLuDI BASE extension package version 1.2.2
11:42 AM Changeset [3257] by olle
Creating MeLuDI tag 1.2.2

Apr 17, 2015:

2:33 PM net.sf.basedb.meludi.notes1_2_2 created by olle
Added information on MeLuDI 1.2.2
2:01 PM Changeset [3256] by olle
Refs #767. Updates due to version number change to "1.2.2". 1. …
1:46 PM Changeset [3255] by olle
Refs #767. MeLuDI updated in the Lab tracking sheet wizards in step 3 …
10:45 AM Changeset [3254] by olle
Refs #767. MeLuDI updated in the Lab tracking sheet/report copy wizard …
8:01 AM Changeset [3253] by olle
Refs #767. MeLuDI should updated to place DNA extracts on a storage …

Apr 16, 2015:

11:34 AM Changeset [3252] by olle
Refs #767. MeLuDI updated in case registration regarding buttons to …

Apr 15, 2015:

3:43 PM Changeset [3251] by olle
Refs #767. MeLuDI updated in case registration by adding buttons to …
11:48 AM Changeset [3250] by olle
Refs #767. MeLuDI updated in case registration by adding buttons to …

Apr 14, 2015:

4:08 PM Changeset [3249] by olle
Refs #767. MeLuDI updated in case registration by adding a button for …
2:35 PM Changeset [3248] by nicklas
References #750: Changes required for BASE version 3.5 Removing …
2:33 PM Changeset [3247] by nicklas
References #750: Changes required for BASE version 3.5 Merge changes …
2:21 PM Changeset [3246] by olle
Refs #767. MeLuDI updated in DNA/RNA extraction wizards to display any …
8:38 AM Changeset [3245] by olle
Refs #767. MeLuDI updated in DNA/RNA extraction wizards to allow …

Apr 13, 2015:

1:51 PM PluginDownload edited by nicklas
Released Reggie 3.2.2 (diff)
1:49 PM Changeset [3244] by nicklas
Preparing for future release Reggie 3.3
1:47 PM Milestone Reggie v3.2.2 completed
See Reggie extension page for more information.
1:47 PM net.sf.basedb.reggie edited by nicklas
Released Reggie 3.2.2 (diff)
1:46 PM reggie-3.2.2.tar.gz attached to net.sf.basedb.reggie by nicklas
Reggie 3.2.2
1:44 PM Changeset [3243] by nicklas
Tagging Reggie 3.2.2
8:35 AM Changeset [3242] by olle
Refs #767 Updates due to version number change to "1.3-dev". 1. …
8:29 AM Ticket #767 (MeLuDI v.1.2.1 bug fixes and improvements) created by olle
This ticket covers bug fixes and improvements to MeLuDI v.1.2.1.
8:25 AM Milestone MeLuDI v1.2.1 completed
Updates of the MeLuDI extension to BASE, a package of registration …
8:13 AM Ticket #759 (MeLuDi v.1.2 bug fixes and improvements) closed by olle
fixed: Ticket closed as MeLuDI version 1.2.1 has been created.
8:07 AM net.sf.basedb.meludi edited by olle
Fixing 1.2.1 changelog link to use new spelling of MeLuDI (diff)
8:03 AM net.sf.basedb.meludi edited by olle
Added information on MeLuDI 1.2.1 (diff)
7:44 AM meludi-1.2.1.tar.gz attached to net.sf.basedb.meludi by olle
MeLuDI BASE extension package version 1.2.1
7:33 AM Changeset [3241] by olle
Creating MeLuDI tag 1.2.1

Apr 10, 2015:

4:44 PM Changeset [3240] by olle
Refs #759. Javascript file extraction_registration.js in …
4:25 PM Changeset [3239] by olle
Refs #759. Updates due to version number change to "1.2.1". 1. …
4:05 PM net.sf.basedb.meludi.notes1_2_1 created by olle
First version of the MeLuDI 1.2.1 update notes page.
1:09 PM Changeset [3238] by olle
Refs #759. MeLuDI updated in Lab tracking protocol for Allprep …
11:48 AM Changeset [3237] by olle
Refs #759. MeLuDI case summary updated in the RNA and DNa info, to …
9:26 AM Changeset [3236] by nicklas
Preparing to release Reggie 3.2.2
8:33 AM Ticket #765 (Add 3x16 pool schema to create mRNA plate wizard) closed by nicklas
fixed: (In [3235]) Fixes #765: Add 3x16 pool schema to create mRNA plate …
8:33 AM Changeset [3235] by nicklas
Fixes #765: Add 3x16 pool schema to create mRNA plate wizard Also …

Apr 9, 2015:

3:37 PM Changeset [3234] by olle
Refs #759. MeLuDI updated in DNA/RNA extraction wizards by changing …
3:01 PM Changeset [3233] by olle
Refs #759. MeLuDI updated regarding storage of the extract source item …

Apr 8, 2015:

3:58 PM Changeset [3232] by olle
Refs #759. MeLuDI updated in case registration by allowing default …
3:16 PM Changeset [3231] by olle
Refs #759. MeLuDI updated in wizard "Lab tracking sheet/report copy" …
12:48 PM Changeset [3230] by olle
Refs #759. MeLuDI updated for qPCR sample ID file generation: 1. …
8:09 AM Changeset [3229] by olle
Refs #759. MeLuDI updated in info text for step 3 in Lab tracking …
7:24 AM Changeset [3228] by olle
Refs #759. MeLuDI updated in CSS file meludi-2.css in …

Apr 7, 2015:

4:42 PM Changeset [3227] by olle
Refs #759. MeLuDI updated for qPCR sample id file generation and qPCR …
2:43 PM Ticket #766 (The popup menu in the Assign barcode wizard is transparent) closed by nicklas
fixed: (In [3226]) Fixes #766: The popup menu in the Assign barcode wizard is …
2:43 PM Changeset [3226] by nicklas
Fixes #766: The popup menu in the Assign barcode wizard is transparent
2:39 PM Ticket #766 (The popup menu in the Assign barcode wizard is transparent) created by nicklas
See image. The menu is functional but it is difficult to see what the …
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