Timeline


and

Nov 21, 2018: Today

4:12 PM Changeset [5134] by nicklas
References #1074: Add more subtypes Added NoSpecimen subtype.
3:51 PM Changeset [5133] by nicklas
References #1075: Change the release exporter to work with list of …
3:51 PM Changeset [5132] by nicklas
References #1075: Change the release exporter to work with list of …
2:05 PM Changeset [5131] by nicklas
References #1075: Change the release exporter to work with list of …
1:35 PM Changeset [5130] by nicklas
References #1075: Change the release exporter to work with list of …
12:07 PM Changeset [5129] by olle
Refs #1029. Updates due to version number change to "1.6.0-dev". …
12:04 PM Changeset [5128] by olle
Refs #1029. Updates due to version number change to "1.6.0a10". 1. …
11:37 AM Changeset [5127] by olle
Refs #1029. FFPE section order form wizard updated with new button …
10:14 AM Changeset [5126] by olle
Refs #1029. FFPE section (specimen) registration wizard updated to …
9:56 AM Ticket #1084 (DataFileFolder annotation should always set a default value) closed by nicklas
fixed: (In [5125]) Fixes #1084: DataFileFolder? annotation should always set a …
9:56 AM Changeset [5125] by nicklas
Fixes #1084: DataFileFolder? annotation should always set a default value
9:55 AM Ticket #1084 (DataFileFolder annotation should always set a default value) created by nicklas
Existing items that doesn't have a value for DataFilesFolder should …
9:48 AM Changeset [5124] by nicklas
References #1075: Change the release exporter to work with list of …
9:11 AM Changeset [5123] by nicklas
References #1074: Add more subtypes The "NO" subtype should be "No".
9:10 AM Changeset [5122] by nicklas
References #1071: Installation wizard doesn't show error message …
9:08 AM Changeset [5121] by olle
Refs #1029. FFPE section (specimen) registration wizard updated with …
8:15 AM Ticket #1083 (Add mBAF plot column to derived bioassay list) closed by nicklas
fixed: (In [5120]) Fixes #1083: Add mBAF plot column to derived bioassay list …
8:15 AM Changeset [5120] by nicklas
Fixes #1083: Add mBAF plot column to derived bioassay list The …
8:11 AM Ticket #1083 (Add mBAF plot column to derived bioassay list) created by nicklas
The column should be used to display thumbnails of the mBAF plots in …
8:04 AM Changeset [5119] by olle
Refs #1029. FFPE section (specimen) registration wizard updated by …
7:56 AM Ticket #1082 (HaplotypeCaller should not write command line parameters in result file) closed by nicklas
fixed: (In [5118]) Fixes #1082: HaplotypeCaller? should not write command line …
7:56 AM Changeset [5118] by nicklas
Fixes #1082: HaplotypeCaller? should not write command line parameters …
7:41 AM Ticket #1082 (HaplotypeCaller should not write command line parameters in result file) created by nicklas
Just in case the command line contains some sensitive information. …

Nov 20, 2018: Yesterday

4:09 PM Changeset [5117] by nicklas
References #1081: The release exporter should export more data The …
3:03 PM Changeset [5116] by olle
Refs #1029. FFPE block order form wizard updated to no longer write …
2:13 PM Changeset [5115] by olle
Refs #1029. Case summary updated to support new naming scheme for DNA …
1:42 PM Changeset [5114] by olle
Refs #1029. FFPE section (specimen) registration wizard updated: 1. …
1:06 PM Ticket #1080 (Add "Manual" option to the DoNotUse annotation type) closed by nicklas
fixed: (In [5113]) Fixes #1080: Add "Manual" option to the DoNotUse?
1:06 PM Changeset [5113] by nicklas
Fixes #1080: Add "Manual" option to the DoNotUse? annotation type
1:03 PM Ticket #1079 (The FrozenTissue date importer should ignore lines without date) closed by nicklas
fixed: (In [5112]) Fixes #1079: The FrozenTissue? date importer should ignore …
1:03 PM Changeset [5112] by nicklas
Fixes #1079: The FrozenTissue? date importer should ignore lines …
12:55 PM Ticket #1081 (The release exporter should export more data) created by nicklas
For existing items we should export more annotations/other data: * …
12:54 PM Changeset [5111] by olle
Refs #1029. FFPE section registration wizard prepared for new sample …
12:52 PM Ticket #1080 (Add "Manual" option to the DoNotUse annotation type) created by nicklas
12:51 PM Ticket #1079 (The FrozenTissue date importer should ignore lines without date) created by nicklas
This includes empty lines and lines with only white-space. Seems like …
10:24 AM Changeset [5110] by olle
Refs #1029. Support for showing connected "chained" items in Case …

Nov 19, 2018:

2:35 PM Changeset [5109] by nicklas
References #1074: Add more subtypes Added Retract, No, NotAsked, …
2:22 PM net.sf.basedb.reggie/notes421 edited by nicklas
Added notes about ticket #1078 (diff)
2:06 PM Changeset [5108] by nicklas
References #1078: "Not asked" subtype should be renamed to "NotAsked?" …
1:27 PM Ticket #1078 ("Not asked" subtype should be renamed to "NotAsked") created by nicklas
The change must be made manually by an administrator before updating …
1:25 PM Changeset [5107] by nicklas
References #1075: Change the release exporter to work with list of …
10:58 AM Changeset [5106] by nicklas
References #1075: Change the release exporter to work with list of …
8:30 AM Changeset [5105] by nicklas
References #1075: Change the release exporter to work with list of …

Nov 16, 2018:

2:19 PM Changeset [5104] by nicklas
References #1075: Change the release exporter to work with list of …
12:32 PM Changeset [5103] by nicklas
References #1075: Change the release exporter to work with list of …
9:20 AM Changeset [5102] by nicklas
References #1075: Change the release exporter to work with list of …
8:26 AM Changeset [5101] by nicklas
References #1075: Change the release exporter to work with list of …

Nov 15, 2018:

2:18 PM Changeset [5100] by nicklas
References #1075: Change the release exporter to work with list of …
1:13 PM Changeset [5099] by nicklas
References #1075: Change the release exporter to work with list of …
11:43 AM Changeset [5098] by nicklas
References #1075: Change the release exporter to work with list of …
9:07 AM Changeset [5097] by nicklas
References #1075: Change the release exporter to work with list of …

Nov 14, 2018:

2:52 PM Changeset [5096] by nicklas
References #1075: Change the release exporter to work with list of …
2:35 PM Changeset [5095] by olle
Refs #1029. Updates needed for FFPE blocks in selection menus to show …
2:19 PM Changeset [5094] by olle
Refs #1029. MeLuDI updated with new configuration variables …
1:26 PM Changeset [5093] by olle
Refs #1029. Basic support for Histology and H&E glass items added. The …
12:05 PM Changeset [5092] by olle
Refs #1029. Support for showing connected "chained" items in Case …
10:46 AM Changeset [5091] by nicklas
References #1075: Change the release exporter to work with list of …
9:22 AM Changeset [5090] by nicklas
References #1075: Change the release exporter to work with list of …
8:15 AM Changeset [5089] by nicklas
References #1075: Change the release exporter to work with list of …

Nov 13, 2018:

3:58 PM net.sf.basedb.reggie/notes421 created by nicklas
Adding update notes for Reggie 4.21
3:39 PM Ticket #1077 (All biosource items should have an external id (release id)) closed by nicklas
fixed: (In [5088]) Fixes #1077: All biosource items should have an external …
3:39 PM Changeset [5088] by nicklas
Fixes #1077: All biosource items should have an external id (release …
2:20 PM Ticket #1077 (All biosource items should have an external id (release id)) created by nicklas
Currently, among the Biosource item types it is only Patient items …
1:25 PM Ticket #1076 (The Level 3 export plug-in should generate rsync script with -L option) closed by nicklas
fixed: (In [5087]) Fixes #1076: The Level 3 export plug-in should generate …
1:25 PM Changeset [5087] by nicklas
Fixes #1076: The Level 3 export plug-in should generate rsync script …
1:12 PM Ticket #1076 (The Level 3 export plug-in should generate rsync script with -L option) created by nicklas
The current script only has -l option (implicit via -a) which …
10:22 AM Ticket #1075 (Change the release exporter to work with list of patients) created by nicklas
The current release exporter plug-in works with a list of raw …
10:17 AM Ticket #1074 (Add more subtypes) created by nicklas
The next release will start from the patient side and include other …

Nov 12, 2018:

11:21 AM Changeset [5086] by nicklas
References #1072: Introduce Lysate item between RNA and Specimen …
8:58 AM Changeset [5085] by nicklas
References #1072: Introduce Lysate item between RNA and Specimen …
8:31 AM Changeset [5084] by olle
Refs #1029. FFPE section order form wizard updated to show material …
7:56 AM Changeset [5083] by olle
Refs #1029. FFPE section order form wizard updated when creating label …
7:49 AM Changeset [5082] by olle
Refs #1029. FFPE section order form generation updated for new PDF …

Nov 9, 2018:

11:11 AM Changeset [5081] by nicklas
References #1072: Introduce Lysate item between RNA and Specimen …
8:52 AM Changeset [5080] by nicklas
References #1072: Introduce Lysate item between RNA and Specimen …

Nov 8, 2018:

1:30 PM Changeset [5079] by nicklas
References #1072: Introduce Lysate item between RNA and Specimen The …
12:59 PM Changeset [5078] by nicklas
References #1072: Introduce Lysate item between RNA and Specimen The …

Nov 7, 2018:

1:12 PM Changeset [5077] by nicklas
References #1072: Introduce Lysate item between RNA and Specimen …
10:39 AM Ticket #1073 (Switch to BASE 3.13) closed by nicklas
fixed: (In [5076]) Fixes #1073: Switch to BASE 3.13
10:39 AM Changeset [5076] by nicklas
Fixes #1073: Switch to BASE 3.13
9:55 AM Ticket #1073 (Switch to BASE 3.13) created by nicklas
Since this is the current version.
9:43 AM Ticket #1072 (Introduce Lysate item between RNA and Specimen) created by nicklas
The existing structure has a direct link between RNA and Specimen. We …

Nov 6, 2018:

4:42 PM Changeset [5075] by olle
Refs #1029. Annotation type Annotationtype.LOCALIZATION updated to …
8:59 AM Changeset [5074] by olle
Refs #1029. FFPE block registration wizard updated for new input …

Nov 5, 2018:

4:29 PM Changeset [5073] by olle
Refs #1029. FFPE block registration wizard updated by fixing typo: …

Nov 1, 2018:

2:34 PM Changeset [5072] by olle
Refs #1029. Updates due to version number change to "1.6.0-dev". …
2:10 PM Changeset [5071] by olle
Refs #1029. Updates due to version number change to "1.6.0a9". 1. …
8:46 AM Changeset [5070] by olle
Refs #1029. FFPE block order form wizard updated by renaming button …
8:37 AM Changeset [5069] by olle
Refs #1029. FFPE section order form wizard updated to create label …

Oct 31, 2018:

9:03 AM Changeset [5068] by olle
Refs #1029. Data access object file SpecimenTube.java in …
8:57 AM Changeset [5067] by nicklas
Changes for future release Reggie 4.21
8:55 AM Milestone Reggie v4.20 completed
See Reggie extension page for more information.
8:55 AM PluginDownload edited by nicklas
Released Reggie 4.20 (diff)
8:53 AM net.sf.basedb.reggie edited by nicklas
Released Reggie 4.20 (diff)
8:51 AM reggie-4.20.tar.gz attached to net.sf.basedb.reggie by nicklas
Reggie 4.20
8:50 AM Ticket #1054 (Even more functionality in the Flagged alignment wizard) closed by nicklas
fixed
8:47 AM Changeset [5066] by nicklas
Tagging Reggie 4.20
8:47 AM Changeset [5065] by nicklas
Preparing to release Reggie 4.20
8:44 AM Changeset [5064] by nicklas
References #1068: Add mBAF analysis step to the Hisat/StringTie?
8:39 AM Changeset [5063] by nicklas
References #1054: Even more functionality in the Flagged alignment …
8:35 AM Ticket #1068 (Add mBAF analysis step to the Hisat/StringTie pipeline) closed by nicklas
fixed

Oct 30, 2018:

2:58 PM Changeset [5062] by olle
Refs #1029. First version of registration wizard for returned FFPE …
10:49 AM Changeset [5061] by olle
Refs #1029. FFPE section block/section wizards updated for new/changed …

Oct 29, 2018:

4:57 PM Changeset [5060] by olle
Refs #1029. First version of FFPE section (specimen) registration …
11:11 AM Ticket #1067 (Highlight related items in Case summary) closed by nicklas
fixed
11:11 AM Changeset [5059] by nicklas
References #1067: Highlight related items in Case summary Do not …
10:45 AM Ticket #1070 (The consent registration wizard doesn't check existing consent) closed by nicklas
fixed: (In [5058]) Fixes #1070: The consent registration wizard doesn't check …
10:45 AM Changeset [5058] by nicklas
Fixes #1070: The consent registration wizard doesn't check existing consent
8:26 AM Changeset [5057] by nicklas
References #1058: Add mBAF analysis step to the Hisat/StringTie?

Oct 26, 2018:

12:53 PM Changeset [5056] by nicklas
References #1058: Add mBAF analysis step to the Hisat/StringTie?
9:39 AM Changeset [5055] by nicklas
9:35 AM Changeset [5054] by nicklas
References #1058: Add mBAF analysis step to the Hisat/StringTie?
8:19 AM Changeset [5053] by olle
Refs #1029. FFPE section order form updated for "Yellow label" FFPE …

Oct 25, 2018:

3:05 PM Changeset [5052] by olle
Refs #1029. FFPE section order form wizard updated to keep track of …

Oct 24, 2018:

1:24 PM Changeset [5051] by nicklas
References #1058: Add mBAF analysis step to the Hisat/StringTie?
8:21 AM Changeset [5050] by nicklas
References #1058: Add mBAF analysis step to the Hisat/StringTie?

Oct 23, 2018:

3:04 PM Changeset [5049] by nicklas
References #1058: Add mBAF analysis step to the Hisat/StringTie?

Oct 22, 2018:

5:00 PM Changeset [5048] by olle
Refs #1029. FFPE section order form wizard updated to show PAD number …
1:09 PM Changeset [5047] by olle
Refs #1029. FFPE block registration wizard updated by fixing bug in …
11:21 AM Changeset [5046] by nicklas
References #1058: Add mBAF analysis step to the Hisat/StringTie?
9:16 AM Changeset [5045] by nicklas
References #1058: Add mBAF analysis step to the Hisat/StringTie?
Note: See TracTimeline for information about the timeline view.