Timeline



Feb 25, 2020: Yesterday

2:21 PM Changeset [5843] by Nicklas Nordborg
References #1218: Implement MIPs alignment Importing some numbers …
11:47 AM Changeset [5842] by Nicklas Nordborg
References #1218: Implement MIPs alignment Added functions for …
11:47 AM Changeset [5841] by Nicklas Nordborg
References #1218: Implement MIPs alignment Finalizing the MIPs …
9:35 AM Changeset [5840] by Nicklas Nordborg
References #1218: Implement MIPs alignment Added functions for …
9:34 AM Changeset [5839] by Nicklas Nordborg
References #1218: Implement MIPs alignment Re-designed the …

Feb 24, 2020:

3:45 PM Changeset [5838] by Nicklas Nordborg
References #1218: Implement MIPs alignment Added functions for the …
3:40 PM Changeset [5837] by Nicklas Nordborg
References #1218: Implement MIPs alignment Re-designed the alignment …
1:38 PM Changeset [5836] by Nicklas Nordborg
References #1218: Implement MIPs alignment Added functions for …
1:37 PM Changeset [5835] by Nicklas Nordborg
References #1218: Implement MIPs alignment Re-designed the two steps …
11:11 AM Changeset [5834] by Nicklas Nordborg
References #1218: Implement MIPs alignment Started to implement a …
11:05 AM Changeset [5833] by Nicklas Nordborg
References #1218: Implement MIPs alignment Started to re-design the …

Feb 21, 2020:

4:19 PM Changeset [5832] by olle
Refs #1029. FFPE section (specimen) registration wizard updated by …
2:36 PM Changeset [5831] by Nicklas Nordborg
References #1218: Implement MIPs alignment Final steps in the …
11:35 AM Changeset [5830] by Nicklas Nordborg
References #1218: Implement MIPs alignment Added alignement with …

Feb 19, 2020:

3:21 PM Changeset [5829] by Nicklas Nordborg
References #1218: Implement MIPs alignment Added …
2:02 PM Changeset [5828] by Nicklas Nordborg
References #1218: Implement MIPs alignment Added FastqToSam? step that …
9:25 AM Changeset [5827] by Nicklas Nordborg
References #1218: Implement MIPs alignment Added Trimmomatic steps to …

Feb 18, 2020:

2:15 PM Changeset [5826] by Nicklas Nordborg
References #1218: Implement MIPs alignment Started to implement this …

Feb 6, 2020:

11:05 AM Changeset [5825] by Jari Häkkinen
Change needed to find R's BLAS/LAPACK implementation

Feb 4, 2020:

4:43 PM Changeset [5824] by olle
Refs #1029. FFPE section (specimen) registration wizard updated in …
1:31 PM Changeset [5823] by olle
Refs #1029. DNA/RNA Quantification wizard updated in an attempt to …
1:07 PM Changeset [5822] by Nicklas Nordborg
Preparing for future release Reggie 4.26
1:05 PM Changeset [5821] by Nicklas Nordborg
Creating bugfix branch for Reggie 4.25
1:04 PM Milestone Reggie v4.25 completed
See Reggie extension page for more information.
1:03 PM PluginDownload edited by Nicklas Nordborg
Released Reggie 4.25 (diff)
1:03 PM net.sf.basedb.reggie edited by Nicklas Nordborg
Released Reggie 4.25 (diff)
1:01 PM reggie-4.25.tar.gz attached to net.sf.basedb.reggie by Nicklas Nordborg
Reggie 4.25
12:58 PM Changeset [5820] by Nicklas Nordborg
Tagging Reggie 4.25
12:57 PM Changeset [5819] by Nicklas Nordborg
Preparing to release Reggie 4.25

Feb 3, 2020:

9:50 AM net.sf.basedb.reggie edited by Nicklas Nordborg
Adding an entry for Reggie 4.25 in the download table (diff)

Jan 31, 2020:

2:30 PM Ticket #1212 (Enable filtering step for variant calling in auto-confirm mode) closed by Nicklas Nordborg
fixed: In 5818: […]
2:30 PM Changeset [5818] by Nicklas Nordborg
Fixes #1212: Enable filtering step for variant calling in auto-confirm mode
8:29 AM net.sf.basedb.reggie/notes425 edited by Nicklas Nordborg
Update the release notes for Reggie 4.25 (diff)

Jan 28, 2020:

12:57 PM Ticket #1209 (Add support for storing TMA specimen) closed by Nicklas Nordborg
fixed
12:54 PM Changeset [5817] by Nicklas Nordborg
References #1220: Auto-analyze in the MIPs pipeline should start the …
12:50 PM Ticket #1208 (Implement wizard for building database of variant frequencies in ...) closed by Nicklas Nordborg
fixed
12:49 PM Ticket #1215 (Include mutation signature analysis in the variant calling pipeline) closed by Nicklas Nordborg
fixed
12:48 PM Ticket #1225 (Update databases used in variant calling pipeline) closed by Nicklas Nordborg
fixed
8:54 AM Changeset [5816] by Nicklas Nordborg
References #1225: Update databases used in variant calling pipeline …
8:20 AM Ticket #1225 (Update databases used in variant calling pipeline) created by Nicklas Nordborg
The aim is to update all databases that has been updated since the …
7:50 AM net.sf.basedb.reggie/notes425 created by Nicklas Nordborg
Added note about updating to Reggie 4.25

Jan 27, 2020:

9:45 AM Ticket #1221 (Display more information in the Variant summary dialog) closed by Nicklas Nordborg
fixed
9:38 AM Ticket #1216 (Finalize the "Confirm MIPs demux" wizard) closed by Nicklas Nordborg
fixed
9:37 AM Ticket #1222 (Remove the G5 distance calculations from the variant calling script) closed by Nicklas Nordborg
fixed
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