Timeline



May 24, 2019: Yesterday

2:35 PM Changeset [5447] by Nicklas Nordborg
References #1130: Import wizard for MIPs aliquot plates Added more …
9:02 AM Changeset [5446] by Nicklas Nordborg
References #1135: Design MIPs plate wizard Implemented functionality …

May 23, 2019:

9:53 AM Changeset [5445] by Nicklas Nordborg
References #1140: Switch to Java 11 The workdir variable should not …
9:52 AM Changeset [5444] by Nicklas Nordborg
References #1130: Import wizard for MIPs aliquot plates Implemented …

May 21, 2019:

8:06 AM Ticket #1140 (Switch to Java 11) closed by Nicklas Nordborg
fixed
8:05 AM Changeset [5443] by Nicklas Nordborg
References #1140: Switch to Java 11 Updated README.
8:00 AM Changeset [5442] by Nicklas Nordborg
References #1133: Re-organize the Reggie front page Adjusting column …
7:36 AM Changeset [5441] by Nicklas Nordborg
References #1142: Create MIPs flow cell and start sequencing Added …

May 20, 2019:

2:12 PM Changeset [5440] by Nicklas Nordborg
References #1135 and #1136. Added functionality for displaying the …
8:42 AM Changeset [5439] by Nicklas Nordborg
References #1142: Create MIPs flow cell and start sequencing Added a …
8:40 AM Ticket #1142 (Create MIPs flow cell and start sequencing) created by Nicklas Nordborg
We need at least one wizard for registering that sequencing has …

May 17, 2019:

2:33 PM Changeset [5438] by Nicklas Nordborg
References #1137: Register MIPs libraries Added Pipeline annotation …
2:24 PM Changeset [5437] by Nicklas Nordborg
References #1137: Register MIPs libraries Added Pipeline annotation …
1:55 PM Changeset [5436] by Nicklas Nordborg
References #1138: MIPs pooling Updated the "Create manual pool" …
11:40 AM Changeset [5435] by Nicklas Nordborg
References #1138: MIPs pooling Updated the "Create flow cells" wizard …
10:02 AM Changeset [5434] by Nicklas Nordborg
References #1138: MIPs pooling Introduced the Pipeline annotation …
8:09 AM Changeset [5433] by Nicklas Nordborg
References #1119: Re-implement TIFF to JPG conversion for Histology …
8:05 AM Changeset [5432] by Nicklas Nordborg
References #1119: Re-implement TIFF to JPG conversion for Histology …

May 16, 2019:

12:56 PM Changeset [5431] by Nicklas Nordborg
References #1140: Switch to Java 11 Replaced the finalize() methods …
9:11 AM Changeset [5430] by Nicklas Nordborg
References #1138: MIPs pooling Implemented a check for duplicate …
8:13 AM Changeset [5429] by Nicklas Nordborg
References #1137: Register MIPs libraries Added BarcodeTemplate

May 15, 2019:

3:31 PM Changeset [5428] by Nicklas Nordborg
References #1138: MIPs pooling Adding the wizard also (should have …

May 14, 2019:

2:42 PM Changeset [5427] by Nicklas Nordborg
References #1138: MIPs pooling First version of the pooling wizard …
11:28 AM Changeset [5426] by Nicklas Nordborg
References #1138: MIPs pooling Added a counter for MIPs plates …
8:49 AM Changeset [5425] by Nicklas Nordborg
References #1137: Register MIPs libraries First version of this …

May 13, 2019:

3:10 PM Changeset [5424] by Nicklas Nordborg
References #1136: MIPs plate lab protocol Started to work on the …
12:53 PM Ticket #1141 (Improve error message when an item is registred in duplicate) closed by Nicklas Nordborg
fixed: In 5423: […]
12:53 PM Changeset [5423] by Nicklas Nordborg
Fixes #1141: Improve error message when an item is registred in …
11:55 AM Ticket #1141 (Improve error message when an item is registred in duplicate) created by Nicklas Nordborg
This happens very rarely. The typical use case is that two users is …
11:32 AM Changeset [5422] by Nicklas Nordborg
References #1134: Implement an "Activity log" Use the new methods …
11:02 AM Changeset [5421] by Nicklas Nordborg
References #1134: Implement an "Activity log" Update the activity log …
9:51 AM Changeset [5420] by Nicklas Nordborg
References #1130: Import wizard for MIPs aliquot plates Updated the …

May 10, 2019:

2:26 PM Changeset [5419] by Nicklas Nordborg
References #1135, #1136 and #1137. Added a counter query for some …
2:11 PM Changeset [5418] by Nicklas Nordborg
References #1135: Design MIPs plate wizard Started to implement …
11:18 AM Changeset [5417] by Nicklas Nordborg
References #1135: Design MIPs plate wizard Implemented registration …

May 9, 2019:

2:33 PM Changeset [5416] by Nicklas Nordborg
Merged Reggie 4.22.2 to the trunk.
2:31 PM Changeset [5415] by Nicklas Nordborg
References #1140: Switch to Java 11 Configured Reggie to be compiled …
2:07 PM Ticket #1140 (Switch to Java 11) created by Nicklas Nordborg
The production server is now running on Java 11, so it should be safe …
1:51 PM Changeset [5414] by Nicklas Nordborg
References #1135: Design MIPs plate wizard Added "Normalization …
10:40 AM Changeset [5413] by Nicklas Nordborg
References #1135: Design MIPs plate wizard Display more information …
9:26 AM Changeset [5412] by Nicklas Nordborg
References #1134: Implement an "Activity log" Found a commit() call …
9:12 AM Milestone Reggie v4.22.2 completed
Bug fixes for Reggie 4.22.1. Revision Log: …
9:12 AM PluginDownload edited by Nicklas Nordborg
Released Reggie 4.22.2 (diff)
9:11 AM net.sf.basedb.reggie edited by Nicklas Nordborg
Released Reggie 4.22.2 (diff)
9:09 AM reggie-4.22.2.tar.gz attached to net.sf.basedb.reggie by Nicklas Nordborg
Reggie 4.22.2
9:07 AM Changeset [5411] by Nicklas Nordborg
Tagging Reggie 4.22.2
9:06 AM Changeset [5410] by Nicklas Nordborg
Preparing to release Reggie 4.22.2
9:04 AM Ticket #1139 (TypeError: item is undefined in Flagged alignment wizard) closed by Nicklas Nordborg
fixed: In 5409: […]
9:04 AM Changeset [5409] by Nicklas Nordborg
Fixes #1139: TypeError?: item is undefined in Flagged alignment wizard
8:56 AM Ticket #1139 (TypeError: item is undefined in Flagged alignment wizard) created by Nicklas Nordborg
[…] This seems to be happening after resolving a Qiacube run where …

May 8, 2019:

3:26 PM Changeset [5408] by Nicklas Nordborg
References #1130: Import wizard for MIPs aliquot plates Added …
1:12 PM Changeset [5407] by Nicklas Nordborg
References #1129: DNA pre-normalization Added PlateProcessing
11:24 AM Changeset [5406] by Nicklas Nordborg
References #1130: Import wizard for MIPs aliquot plates Added …
11:23 AM Changeset [5405] by Nicklas Nordborg
References #1130: Import wizard for MIPs aliquot plates Added …
9:09 AM Changeset [5404] by Nicklas Nordborg
References #1134: Implement an "Activity log" Added support for …
8:59 AM Changeset [5403] by Nicklas Nordborg
References #1130: Import wizard for MIPs aliquot plates Added a …

May 7, 2019:

12:54 PM Changeset [5402] by Nicklas Nordborg
References #1130: Import wizard for MIPs aliquot plates Added support …
10:40 AM Changeset [5401] by Nicklas Nordborg
References #1130: Import wizard for MIPs aliquot plates Added support …

May 6, 2019:

2:21 PM Changeset [5400] by Nicklas Nordborg
References #1130: Import wizard for MIPs aliquot plates Implemented …
11:19 AM Changeset [5399] by Nicklas Nordborg
References #1130: Import wizard for MIPs aliquot plates Implemented …

May 3, 2019:

4:45 PM Changeset [5398] by olle
Refs #1029. Registration wizard for returned FFPE blocks updated by …
11:20 AM Changeset [5397] by Nicklas Nordborg
References #1130: Import wizard for MIPs aliquot plates Started to …
8:37 AM Changeset [5396] by olle
Refs #1029. Registration wizard for returned FFPE blocks updated by …

May 2, 2019:

2:16 PM Changeset [5395] by olle
Refs #1029. Case summary for active project SCAN-B-rec updated by …
10:39 AM Changeset [5394] by olle
Refs #1029. FFPE block registration updated in step 2 by changing …
10:32 AM Changeset [5393] by olle
Refs #1029. Referral generation updated for FFPE section order forms …
9:33 AM Changeset [5392] by Nicklas Nordborg
References #1135: Design MIPs plate wizard Implemented selection of …
8:55 AM Changeset [5391] by olle
Refs #1029. Referral generation updated to not refer to name of …

Apr 29, 2019:

11:50 AM Changeset [5390] by Nicklas Nordborg
References #1135: Design MIPs plate wizard Started to work on this …
8:18 AM Changeset [5389] by Nicklas Nordborg
References #1133: Re-organize the Reggie front page Added lots of …

Apr 26, 2019:

1:22 PM Ticket #1138 (MIPs pooling) created by Nicklas Nordborg
Pooling of MIPs library plates. Typically, a pool is made up of 1 to 3 …
1:21 PM Ticket #1137 (Register MIPs libraries) created by Nicklas Nordborg
This step is probably only a success/failure option with some …
1:16 PM Ticket #1136 (MIPs plate lab protocol) created by Nicklas Nordborg
In the RNA pipeline there are three protocols that are plate-based, …
1:11 PM Ticket #1135 (Design MIPs plate wizard) created by Nicklas Nordborg
Similar to the wizard for designing mRNA plates but with a lot less …
10:59 AM Ticket #1134 (Implement an "Activity log") closed by Nicklas Nordborg
fixed
10:58 AM Ticket #1120 (Remove Apache POI from distribution) closed by Nicklas Nordborg
fixed
10:58 AM Ticket #1131 (Switch to BASE 3.15) closed by Nicklas Nordborg
fixed
10:56 AM Changeset [5388] by Nicklas Nordborg
References #1134: Implement an "Activity log" Added an entry "Nothing …
10:20 AM Changeset [5387] by Nicklas Nordborg
References #1134: Implement an "Activity log" Added activity logging …
9:30 AM Changeset [5386] by Nicklas Nordborg
References #1133: Re-organize the Reggie front page Hide NeoPrep wizards.
9:27 AM Changeset [5385] by Nicklas Nordborg
References #1134: Implement an "Activity log" Reading and saving the …
8:53 AM Changeset [5384] by Nicklas Nordborg
References #1134: Implement an "Activity log" Added ActivityDef for …
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