Add Illumina SNP platform to the installation program
We now have a bit more information about the Illumina SNP platform. It should be a file-only platform. The array design needs manifest files which are similar to the BGX files used in the expression platform. A manual step is needed to create the manifest files. Start with a BPM file and open it in BeadStudio. Save the file as a csv file. See #93.
Raw data comes from Beadstudio and there are several data sets in a single file. A custom plug-in will use the original file, create one raw bioassay for each data set and then split the original file into one file with data for a single data set in it. See #101.
So, the installation program needs to create:
- A file-only platform variant, the idea is that this should be a 3-channel data type
- A new data file type for the manifest files (linked with array design, required)
- A new data file type for the original data file (linked with raw bioassay, optional)
- A new data file type for the split data file (linked with raw bioassay, required)
Change History
(7)
| Description: |
modified (diff)
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| Priority: |
major → blocker
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| Milestone: |
Illumina package v1.x → Illumina package v1.0
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| Priority: |
blocker → critical
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| Owner: |
changed from Johan Enell to Martin Svensson
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| Status: |
new → assigned
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| Resolution: |
→ fixed
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| Status: |
assigned → closed
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(In [589]) References #100 Installation is now including SNP platform-variant and data file types but metadata-extractor and validator are not being set for the data file types. Depends on #93 New SNP-specific columns have been added to extended-properties.