Import plug-in for SNP raw data
|Reported by:||Nicklas Nordborg||Owned by:||Martin Svensson|
|Priority:||critical||Milestone:||Illumina package v1.0|
Description (last modified by )
SNP data comes from BeadStudio with one file that contains several data sets. This plug-in should be similar to the BASE core plug-in that imports Illumina data. It should:
- Create one raw bioassay for each data set
- Split the original data file into smaller files containing a single data set. The new files should get the extension '.split'
- Both the original data file and the split file should be linked to the raw bioassays
- The plug-in should set the number of data values with RawBioAssay.setNumFileSpots().
The plug-in should be started from either the raw bioassays list page or from an experiment that is of the correct type (Illumina SNP variant). If started from an experiment the new raw bioassays should be linked with that experiment.