Timeline
Oct 8, 2019:
- 3:51 PM Ticket #1192 (The "Flag RNA" option should not be checked by default in legacy ...) closed by
- fixed: In 5648: […]
- 3:51 PM Changeset [5648] by
- Fixes #1192: The "Flag RNA" option should not be checked by default in …
- 2:05 PM Ticket #1192 (The "Flag RNA" option should not be checked by default in legacy ...) created by
- Jobs that fail due to some unexpected crash should not cause the "Flag …
- 1:39 PM Changeset [5647] by
- References #1190: SCAN-B report Added first version of a SCAN-B …
- 9:36 AM Ticket #1191 (Remove debug output from GenotypeMessage) created by
-
The call to
System.out.println()at … - 8:03 AM Ticket #1190 (SCAN-B report) created by
- A new report, the "SCAN-B report" should be implemented. It will …
Oct 7, 2019:
- 2:18 PM Ticket #1188 (Register destruction of stored samples and extracts in the "Retraction ...) closed by
- fixed
- 1:31 PM Changeset [5646] by
- References #1188: Register destruction of stored samples and extracts …
- 11:20 AM Ticket #1189 (The retraction destruction wizard try to connect to the file server ...) closed by
- fixed: In 5645: […]
- 11:20 AM Changeset [5645] by
- Fixes #1189: The retraction destruction wizard try to connect to the …
- 11:07 AM Ticket #1189 (The retraction destruction wizard try to connect to the file server ...) created by
- When running the retraction wizard for final deletion of items there …
- 9:57 AM Changeset [5644] by
- References #1188: Register destruction of stored samples and extracts …
- 9:36 AM Changeset [5643] by
- References #1188: Register destruction of stored samples and extracts …
Oct 4, 2019:
- 9:39 AM Changeset [5642] by
- References #1188: Register destruction of stored samples and extracts …
- 8:20 AM Changeset [5641] by
- References #1188: Register destruction of stored samples and extracts …
- 8:19 AM Changeset [5640] by
- References #1188: Register destruction of stored samples and extracts …
Oct 3, 2019:
- 3:10 PM Changeset [5639] by
- References #1188: Register destruction of stored samples and extracts …
- 9:47 AM Changeset [5638] by
- References #1188: Register destruction of stored samples and extracts …
- 8:25 AM Changeset [5637] by
- References #1188: Register destruction of stored samples and extracts …
Oct 2, 2019:
- 1:30 PM Ticket #1188 (Register destruction of stored samples and extracts in the "Retraction ...) created by
- The typical situation is that a "Retract" or "RetroNo?" is received and …
- 1:07 PM Changeset [5636] by
- References #1187: Implement an "External RNA import" wizard Added …
Oct 1, 2019:
- 3:42 PM Changeset [5635] by
- References #1187: Implement an "External RNA import" wizard Display …
- 3:09 PM Changeset [5634] by
- References #1187: Implement an "External RNA import" wizard Added …
Sep 30, 2019:
- 2:11 PM Changeset [5633] by
- References #1187: Implement an "External RNA import" wizard …
- 10:56 AM Changeset [5632] by
- References #1187: Implement an "External RNA import" wizard Added …
Sep 27, 2019:
- 1:33 PM Changeset [5631] by
- References #1187: Implement an "External RNA import" wizard Added …
- 11:12 AM Changeset [5630] by
- References #1187: Implement an "External RNA import" wizard Added …
Sep 26, 2019:
- 1:49 PM Changeset [5629] by
- Found a debug message that should not be there.
- 7:51 AM Ticket #1119 (Re-implement TIFF to JPG conversion for Histology images using the ...) closed by
- fixed: This ticket had already been fixed.
Sep 25, 2019:
- 8:46 AM Ticket #1187 (Implement an "External RNA import" wizard) created by
- Should be similar to the MIPs DNA importer, but a lot simpler. We need …
Sep 24, 2019:
- 3:52 PM Changeset [5628] by
- References #1186: Implement plug-in for running Single Sample …
- 2:43 PM Changeset [5627] by
- References #1186: Implement plug-in for running Single Sample …
- 2:22 PM Changeset [5626] by
- References #1186: Implement plug-in for running Single Sample …
- 1:21 PM Ticket #1186 (Implement plug-in for running Single Sample Predictor models) created by
- To start testing the Single Sample Predictor integration with BASE a …
Sep 23, 2019:
- 2:31 PM net.sf.basedb.reggie/HistoryOfReggie edited by
- Added Reggie 4.23.1 (diff)
- 1:32 PM Milestone Reggie v4.23.1 completed
- Bug fixes and enhancements for Reggie 4.23. Revision Log: …
- 1:31 PM Changeset [5625] by
- Changes for future release Reggie 4.24
- 1:30 PM Changeset [5624] by
- Creating bugfix branch for Reggie 4.23
- 1:28 PM PluginDownload edited by
- Released Reggie 4.23.1 (diff)
- 1:28 PM net.sf.basedb.reggie edited by
- Released Reggie 4.23.1 (diff)
- 1:25 PM Changeset [5623] by
- Tagging Reggie 4.23.1
- 1:24 PM Changeset [5622] by
- Preparing to release Reggie 4.23.1
- 1:17 PM Ticket #1178 (Scripts should not fail if it can't change group on files) closed by
- fixed: Since there is no good way to report back warnings from the other …
- 8:26 AM Changeset [5621] by
- References #1181: Incorrect counter for pilot reports in the activity …
Sep 20, 2019:
- 1:40 PM Ticket #1185 (Add link to the demultiplex metrics file in the "Confirm demux" wizards) closed by
- fixed: In 5620: […]
- 1:40 PM Changeset [5620] by
- Fixes #1185: Add link to the demultiplex metrics file in the "Confirm …
- 11:56 AM Ticket #1185 (Add link to the demultiplex metrics file in the "Confirm demux" wizards) created by
- It would be nice if this file could easily be accessed instead of …
- 11:30 AM Changeset [5619] by
- References #1178: Scripts should not fail if it can't change group on …
- 8:51 AM Changeset [5618] by
- References #1178: Scripts should not fail if it can't change group on …
- 8:43 AM Ticket #1184 (Increase the number of entries displayed by the activity log) closed by
- fixed: In 5617: […]
- 8:43 AM Changeset [5617] by
- Fixes #1184: Increase the number of entries displayed by the activity …
Sep 19, 2019:
- 2:50 PM Ticket #1184 (Increase the number of entries displayed by the activity log) created by
- This seems to currently be limited to 25, but there is room for more. …
- 1:13 PM Ticket #1183 (Change to picard 2.20.8 or later) closed by
- fixed: In 5616: […]
- 1:13 PM Changeset [5616] by
- Fixes #1183: Change to picard 2.20.8 or later
- 1:10 PM Ticket #1183 (Change to picard 2.20.8 or later) created by
-
This version includes an improvement in
ExtractIlluminaBarcodesthat … - 9:46 AM Ticket #1182 (Activity log entry for "pilot reports" should be registered by ...) closed by
- fixed: In 5615: […]
- 9:46 AM Changeset [5615] by
- Fixes #1182: Activity log entry for "pilot reports" should be …
- 8:50 AM Ticket #1182 (Activity log entry for "pilot reports" should be registered by ...) created by
- Right now it is logged as if the report was manually created.
- 8:33 AM Ticket #1181 (Incorrect counter for pilot reports in the activity log) closed by
- fixed: In 5614: […]
- 8:33 AM Changeset [5614] by
- Fixes #1181: Incorrect counter for pilot reports in the activity log …
- 8:12 AM Ticket #1181 (Incorrect counter for pilot reports in the activity log) created by
-
Created 16777214 pilot reportsThis is clearly not correct. The …
Sep 18, 2019:
- 2:14 PM Ticket #1179 (The "Number of slots" value in the Start demux wizard is always from ...) closed by
- fixed: In 5613: […]
- 2:14 PM Changeset [5613] by
- Fixes #1179: The "Number of slots" value in the Start demux wizard is …
- 1:11 PM Ticket #1180 (Activity log entry for "sequencing ended" should be registered by ...) closed by
- fixed: In 5612: […]
- 1:11 PM Changeset [5612] by
- Fixes #1180: Activity log entry for "sequencing ended" should be …
- 1:08 PM Ticket #1180 (Activity log entry for "sequencing ended" should be registered by ...) created by
- Right now it is logged as if the sequencing was manually registered.
- 10:38 AM Ticket #1179 (The "Number of slots" value in the Start demux wizard is always from ...) created by
- reggie-config.xml has a configuration option for the number of slots …
- 10:19 AM Ticket #1177 (Remove <add-read-groups-options> from reggie-config.xml) closed by
- fixed: In 5611: […]
- 10:19 AM Changeset [5611] by
- Fixes #1177: Remove <add-read-groups-options> from reggie-config.xml …
Sep 17, 2019:
- 4:53 PM Changeset [5610] by
- removed obsolete script
- 1:55 PM Ticket #1178 (Scripts should not fail if it can't change group on files) created by
- See #1174. This implemented a 'chgrp' command to allow external data …
Sep 16, 2019:
- 2:53 PM Ticket #1177 (Remove <add-read-groups-options> from reggie-config.xml) created by
- This configuration option is not needed since the …
- 9:10 AM Changeset [5609] by
- Changes for future release Reggie 4.24
- 9:09 AM Milestone Reggie v4.23 completed
- See Reggie extension page for more information.
- 9:09 AM Ticket #1146 (Demux for the MIPs pipeline) closed by
- fixed
- 9:08 AM PluginDownload edited by
- Released Reggie 4.23 (diff)
- 9:07 AM net.sf.basedb.reggie edited by
- Released Reggie 4.23 (diff)
- 9:03 AM Changeset [5608] by
- Tagging Reggie 4.23
- 9:03 AM Changeset [5607] by
- Preparing to release Reggie 4.23
Sep 13, 2019:
- 3:03 PM Changeset [5606] by
- References #1146: Demux for the MIPs pipeline Changed default 'smp' …
- 1:11 PM Ticket #1176 (The keep-session-alive functionality should not hide current messages) closed by
- fixed: In 5605: […]
- 1:11 PM Changeset [5605] by
- Fixes #1176: The keep-session-alive functionality should not hide …
- 9:53 AM net.sf.basedb.reggie/notes423 edited by
- Renamed MIPS_Pool to MIPS_Panel (diff)
- 9:51 AM Ticket #1176 (The keep-session-alive functionality should not hide current messages) created by
- I noted a problem with the MIPs plate/aliquot importer. If there are …
- 9:39 AM Changeset [5604] by
- References #1136: MIPs plate lab protocol Changes related to the …
- 9:27 AM Changeset [5603] by
- References #1135: Design MIPs plate wizard Changes related to the …
- 9:12 AM Changeset [5602] by
- References #1129: DNA pre-normalization Changes related to the …
- 8:58 AM Changeset [5601] by
- References #1130: Import wizard for MIPs aliquot plates Changed the …
- 8:52 AM Changeset [5600] by
- References #1130: Import wizard for MIPs aliquot plates Changed the …
- 8:49 AM Changeset [5599] by
- References #1130: Import wizard for MIPs aliquot plates Changed …
Sep 11, 2019:
- 3:07 PM Changeset [5598] by
- Removing unused import.
- 2:29 PM Ticket #1175 (Temporary R working files may be left in open state) closed by
- fixed: In 5597: […]
- 2:29 PM Changeset [5597] by
- Fixes #1175: Temporary R working files may be left in open state
- 2:26 PM Ticket #1175 (Temporary R working files may be left in open state) created by
-
Assuming that the
closeInparameter is true andoverwriteis … - 2:14 PM net.sf.basedb.reggie/notes423 edited by
- Added information about giving read access to data files for external … (diff)
- 2:07 PM Ticket #1174 (Permission on files created by secondary analysis for external samples) closed by
- fixed
- 1:49 PM Changeset [5596] by
- References #1174: Permission on files created by secondary analysis …
- 1:32 PM Changeset [5595] by
- References #1174: Permission on files created by secondary analysis …
- 12:52 PM Changeset [5594] by
- References #1174: Permission on files created by secondary analysis …
- 11:14 AM Changeset [5593] by
- References #1174: Permission on files created by secondary analysis …
- 9:31 AM Ticket #1174 (Permission on files created by secondary analysis for external samples) created by
- Files that are created as part of secondary analysis are usually …
Sep 10, 2019:
- 1:33 PM Tickets #1159,1157,1172 batch updated by
- fixed
- 11:05 AM net.sf.basedb.reggie/notes423 edited by
- Added more details about barcode template bioplates (diff)
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