#1183 closed enhancement (fixed)
Change to picard 2.20.8 or later
| Reported by: | Nicklas Nordborg | Owned by: | Nicklas Nordborg |
|---|---|---|---|
| Priority: | major | Milestone: | Reggie v4.23.1 |
| Component: | net.sf.basedb.reggie | Keywords: | |
| Cc: |
Description
This version includes an improvement in ExtractIlluminaBarcodes that makes it a lot faster when used with a large list of possible barcodes. Testing with our long list (2624 barcodes) reduced the time from ~2 hours to ~3 minutes.
The performance improvement was included already in picard 2.20.6 but it seemed to have a bug in the calculation of mismatches that caused some reads to be lost (~1%).
https://github.com/broadinstitute/picard/releases/tag/2.20.8
https://github.com/broadinstitute/picard/releases/tag/2.20.6
Change History (2)
comment:1 by , 5 years ago
| Resolution: | → fixed |
|---|---|
| Status: | new → closed |
comment:2 by , 5 years ago
| Milestone: | Reggie v4.24 → Reggie v4.23.1 |
|---|
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