Opened 4 years ago
Closed 3 years ago
#1186 closed task (fixed)
Implement plug-in for running Single Sample Predictor models
Reported by: | Nicklas Nordborg | Owned by: | Nicklas Nordborg |
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Priority: | major | Milestone: | Reggie v4.27 |
Component: | net.sf.basedb.reggie | Keywords: | |
Cc: |
Description
To start testing the Single Sample Predictor integration with BASE a simple plug-in should be implemented.
It should be possible to select a number of raw bioassays (StringTie?) and SSP models and have the plug-in run the R scripts to evaluate the selected models for all raw bioassays. Results can be imported back into BASE and saved as annotations associated with the raw bioassays.
Some kind of configuration is needed in order to map the outcome from a given model to an annotation type.
Change History (10)
comment:1 Changed 4 years ago by
comment:4 Changed 4 years ago by
Status: | new → accepted |
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comment:8 Changed 4 years ago by
Milestone: | Reggie v4.24 → Reggie v4.x |
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comment:9 Changed 3 years ago by
Milestone: | Reggie v4.x → Reggie v4.27 |
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The plug-in was included in Reggie 4.27.
comment:10 Changed 3 years ago by
Resolution: | → fixed |
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Status: | accepted → closed |
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