#1423 closed defect (fixed)

NullPointerException when starting Methylation beta-analysis

Reported by: Nicklas Nordborg Owned by: Nicklas Nordborg
Priority: blocker Milestone: Reggie v4.41.1
Component: net.sf.basedb.reggie Keywords:
Cc:

Description

Selecting items, and job options works, but the final registration fails:

java.lang.NullPointerException: Cannot invoke "net.sf.basedb.core.ItemSubtype.getName()" because "subtype" is null
        at net.sf.basedb.reggie.dao.Subtype.get(Subtype.java:621)
        at net.sf.basedb.reggie.dao.ReggieItem.findParentBioMaterial(ReggieItem.java:305)
        at net.sf.basedb.reggie.dao.ReggieItem.findSingleParent(ReggieItem.java:337)
        at net.sf.basedb.reggie.grid.MethylationBetaJobCreator.createBetaJobs(MethylationBetaJobCreator.java:122)
        at net.sf.basedb.reggie.servlet.MethylationServlet.doPost(MethylationServlet.java:270)
        at javax.servlet.http.HttpServlet.service(HttpServlet.java:652)
...

It seems like this happens when the code is trying to find the parent Specimen item and there is an item in the parent chain that doesn't have any subtype.

Change History (2)

comment:1 by Nicklas Nordborg, 15 months ago

Milestone: Reggie v4.40.3Reggie v4.41.1

Milestone renamed

comment:2 by Nicklas Nordborg, 15 months ago

Resolution: fixed
Status: newclosed

In 6939:

Fixes #1423: NullPointerException when starting Methylation beta-analysis

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