Opened 2 years ago

Closed 2 years ago

#1424 closed defect (fixed)

Incorrect path to UCSC_hg38_knownGenes_22sep2014.gtf

Reported by: Nicklas Nordborg Owned by: Nicklas Nordborg
Priority: minor Milestone: Reggie v4.41.1
Component: net.sf.basedb.reggie Keywords:
Cc:

Description

The default configuration for the legacy pipeline on the Slurm cluster is incorrect. Jobs fail with: 

File 'CGTF-->/casa20/reference/scanb//UCSC_hg38_knownGenes_22sep2014.gtf' doesn't exists

It seems like UCSC_hg38_knownGenes_22sep2014 is missing between the \\ in the path. The same issue is present in the path to UCSC_hg38_knownGenes_22sep2014_duplicate_transcript_id.txt.

Change History (1)

comment:1 by Nicklas Nordborg, 2 years ago

Resolution: → fixed
Status: new → closed

In 6940:

Fixes #1424: Incorrect path to UCSC_hg38_knownGenes_22sep2014.gtf

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