Opened 6 years ago

Closed 6 years ago

#1026 closed task (fixed)

Create wizard for secondary analysis cleanup

Reported by: Nicklas Nordborg Owned by: Nicklas Nordborg
Priority: major Milestone: Reggie v4.16
Component: net.sf.basedb.reggie Keywords:


There are times when, for example, a demux or alignment needs to be deleted and re-done. This can be a bit complicated since there may be several child items and lots of files linked to the items.

Inspired by the temporary wizard created for #1015 in [4680] it should not be too difficult to implement a more generic wizard.

  • The wizard should look for derived or raw bioassays that has been marked for deletion.
  • The wizard should automatically find child items and linked files.
  • The wizard should not care about files on the file server. This can be handled by the "Stray files" wizard.

Change History (3)

comment:1 by Nicklas Nordborg, 6 years ago

Status: newassigned

comment:2 by Nicklas Nordborg, 6 years ago

(In [4687]) References #1026: Create wizard for secondary analysis cleanup

Implemented a wizard for cleaning up. It's a bit tricky to handle the recursive nature of derived bioassays at the same time as trying to batch items in not too large chunks. Hopefully it works, but may need to test some bigger use cases.

comment:3 by Nicklas Nordborg, 6 years ago

Resolution: fixed
Status: assignedclosed
Note: See TracTickets for help on using tickets.