Opened 15 years ago
Closed 15 years ago
#102 closed task (fixed)
Intensity calculator for Illumina SNP data
| Reported by: | Nicklas Nordborg | Owned by: | Nicklas Nordborg |
|---|---|---|---|
| Priority: | major | Milestone: | Illumina package v1.0 |
| Component: | net.sf.basedb.illumina | Keywords: | |
| Cc: |
Description
Since the raw data is stored in files, this plug-in needs to extract data from the files. The interesting columns are: GType, B Allele Freq and Log R Ratio. The hardest part is to find the correct reporter. First, the value from Address column from the data file is needed. This value should be looked up in the AdressA_ID column from the manifest file connected to the array design. More details will follow.
Change History (5)
comment:1 Changed 15 years ago by
| Milestone: | Illumina package v1.x → Illumina package v1.0 |
|---|
comment:2 Changed 15 years ago by
| Owner: | changed from Johan Enell to Nicklas Nordborg |
|---|---|
| Status: | new → assigned |
comment:3 Changed 15 years ago by
comment:4 Changed 15 years ago by
comment:5 Changed 15 years ago by
| Resolution: | → fixed |
|---|---|
| Status: | assigned → closed |
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(In [624]) References #102: Intensity calculator for Illumina SNP data
The main parts are working. Need more testing and probably better error handling and/or configuration options.