Intensity calculator for Illumina SNP data
|Illumina package v1.0
Since the raw data is stored in files, this plug-in needs to extract data from the files. The interesting columns are: GType, B Allele Freq and Log R Ratio. The hardest part is to find the correct reporter. First, the value from Address column from the data file is needed. This value should be looked up in the AdressA_ID column from the manifest file connected to the array design. More details will follow.