Opened 16 years ago
Last modified 16 years ago
#100 closed enhancement
Add Illumina SNP platform to the installation program — at Version 1
Reported by: | Nicklas Nordborg | Owned by: | Johan Enell |
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Priority: | critical | Milestone: | Illumina package v1.0 |
Component: | net.sf.basedb.illumina | Keywords: | |
Cc: |
Description (last modified by )
We now have a bit more information about the Illumina SNP platform. It should be a file-only platform. The array design needs manifest files which are similar to the BGX files used in the expression platform. A manual step is needed to create the manifest files. Start with a BPM file and open it in BeadStudio. Save the file as a csv file. See #93.
Raw data comes from Beadstudio and there are several data sets in a single file. A custom plug-in will use the original file, create one raw bioassay for each data set and then split the original file into one file with data for a single data set in it. See #101.
So, the installation program needs to create:
- A file-only platform variant, the idea is that this should be a 3-channel data type
- A new data file type for the manifest files (linked with array design, required)
- A new data file type for the original data file (linked with raw bioassay, optional)
- A new data file type for the split data file (linked with raw bioassay, required)