Opened 21 hours ago
Last modified 16 hours ago
#1657 new enhancement
The RNAQC "Create aliqouts" wizard should use an item list with RNA items as input
Reported by: | Nicklas Nordborg | Owned by: | Nicklas Nordborg |
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Priority: | major | Milestone: | Reggie v5.6.3 |
Component: | net.sf.basedb.reggie | Keywords: | |
Cc: |
Description
This wizard is currently checking for RNA items that is missing a RNAQC child item.
The ABIM and Hered projects (see #1632) include some RNA that where RNAQC was never performed (eg. xxx.r2 items) and now they are showing up in the "Create aliquots" wizard but there is no plan to run RNAQC on those items at the moment. In this case we can't rely on setting AutoProcessing=Disable
on the RNA since that is would interfere with pre-normalization workflow.
The best solution is probably to have an item list where RNA items are added to after extraction and removed when the RNAQC aliquots have been created.
Change History (4)
comment:1 by , 17 hours ago
Summary: | The RNAQC "Create aliqouts" wizard should use an item list or RNA items as input → The RNAQC "Create aliqouts" wizard should use an item list with RNA items as input |
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In [8058]:
References #1657: The RNAQC "Create aliqouts" wizard should use an item list or RNA items as input
Created a new item list:
RNAQC pipeline
. The counter on the index page has been updated.