Opened 20 months ago
Closed 19 months ago
#1470 closed enhancement (fixed)
Use multiple threads when loading existing VCF files in the genotype QC wizard
Reported by: | Nicklas Nordborg | Owned by: | Nicklas Nordborg |
---|---|---|---|
Priority: | major | Milestone: | Reggie v4.46 |
Component: | net.sf.basedb.reggie | Keywords: | |
Cc: |
Description
This could save some time when running this wizard.
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In [7071]
Referenes #1470: Use multiple threads when loading existing VCF files in the genotype QC wizard
The VCF files are now parsed by separate threads. Unfortunately we don't gain that much. It seems to be because getting the reference to the actual VCF file requires additional database queries which takes about the same amount of time as the parsing. So the parsing threads will have to wait for the next file and it doesn't help if we have more than 2.
I think it should be possible to improve this if we can get some functionality into the BASE core API for loading AnyToAny links. See https://base.thep.lu.se/ticket/2296