Opened 18 months ago

Closed 18 months ago

#1380 closed defect (fixed)

The prepDE step in the StringTie analysis generate files with incorrect header

Reported by: Nicklas Nordborg Owned by: Nicklas Nordborg
Priority: critical Milestone: Reggie v4.37.4
Component: net.sf.basedb.reggie Keywords:
Cc:

Description

See #1266 for the introduction of prepDE in the StringTie pipeline. The name of the StringTie item is used in the script, but we should use the external name instead. It was (almost) correct in the first implementation [6001] but broke in [6003].

Headers in existing gene_count.csv and transcript_count.csv files need to be manually updated.

Change History (1)

comment:1 Changed 18 months ago by Nicklas Nordborg

Resolution: → fixed
Status: new → closed

In 6650:

Fixes #1380: The prepDE step in the StringTie? analysis generate files with incorrect header

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