Opened 3 years ago
Closed 3 years ago
#1380 closed defect (fixed)
The prepDE step in the StringTie analysis generate files with incorrect header
Reported by: | Nicklas Nordborg | Owned by: | Nicklas Nordborg |
---|---|---|---|
Priority: | critical | Milestone: | Reggie v4.37.4 |
Component: | net.sf.basedb.reggie | Keywords: | |
Cc: |
Description ¶
See #1266 for the introduction of prepDE in the StringTie pipeline. The name of the StringTie item is used in the script, but we should use the external name instead. It was (almost) correct in the first implementation [6001] but broke in [6003].
Headers in existing gene_count.csv
and transcript_count.csv
files need to be manually updated.
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