Opened 2 years ago

Closed 2 years ago

#1340 closed enhancement (fixed)

The legacy pipeline should have lower priority when started via auto-confirm

Reported by: Nicklas Nordborg Owned by: Nicklas Nordborg
Priority: minor Milestone: Reggie v4.33.1
Component: net.sf.basedb.reggie Keywords:
Cc:

Description

The auto-confirmation after demux create jobs for both the legacy pipeline and the Hisat/Stringtie pipeline. The legacy jobs are added first to the job queue. This is a bit unfortunate since it means that about half of the Hisat jobs have to wait until there are slots available, and this also affects subsequent jobs for Stringtie, variant calling, etc.

It would be better if the legacy jobs was added last in the queue and with lower priority. This would make the Hisat/Stringtie pipeline finish faster.

Change History (3)

comment:1 by Nicklas Nordborg, 2 years ago

In 6431:

References #1340: The legacy pipeline should have lower priority when started via auto-confirm

Switch order of job submission so that Hisat jobs are submitted before Legacy jobs.

comment:2 by Nicklas Nordborg, 2 years ago

In 6432:

References #1340: The legacy pipeline should have lower priority when started via auto-confirm

Legacy jobs are now created with priority -1023.

comment:3 by Nicklas Nordborg, 2 years ago

Resolution: → fixed
Status: new → closed
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