The legacy pipeline should have lower priority when started via auto-confirm
|Reported by:||Nicklas Nordborg||Owned by:||Nicklas Nordborg|
The auto-confirmation after demux create jobs for both the legacy pipeline and the Hisat/Stringtie pipeline. The legacy jobs are added first to the job queue. This is a bit unfortunate since it means that about half of the Hisat jobs have to wait until there are slots available, and this also affects subsequent jobs for Stringtie, variant calling, etc.
It would be better if the legacy jobs was added last in the queue and with lower priority. This would make the Hisat/Stringtie pipeline finish faster.