ReadLengthAvg annotations are -1
|Reported by:||Nicklas Nordborg||Owned by:||Nicklas Nordborg|
For the latest sequencing run, there is only one merged item that has a value for the
ReadLengthAvgR2 annotations. All other merged items have
The output file from the job scripts contain values for all items.
catalina.out log file has a few error message like:
10:53:49,865 ERROR DemuxJobCreator:820 - At line 5: Found readlength data #3 for library xxxxxxxx.1.l.r.n.m.c.lib.g 10:53:49,865 ERROR DemuxJobCreator:820 - At line 6: Found readlength data #4 for library xxxxxxxx.1.l.r.n.m.c.lib.g ...
The first line is for read
#3 and it continues with 2 error messages per merged item up to
#48. The problem seems to be that the counter for the read number is not reset for each new merged item, but continues to increase for each data line in the result file.