Opened 4 years ago

Closed 4 years ago

#1260 closed defect (fixed)

Demux started via auto-confirm should include items with DoNotUse flag

Reported by: Nicklas Nordborg Owned by: Nicklas Nordborg
Priority: major Milestone: Reggie v4.27.4
Component: net.sf.basedb.reggie Keywords:


In ticket #1054 [4985] a function was added to the demux wizard that exclude items that have been marked with DoNotUse from the demux. While it was possible to override this when starting the demux manually the auto-confirmation from sequencing always excluded such items.

Initially this was not a problem since new items are never marked as DoNotUse. But this changed with ticket #1217 which copy the DoNotUse flag to child items. This will cause problems when re-processing from an RNA or Lysate (for example) which is marked as DoNotUse and the re-processing is made in order to resolve a specific issue. The demuxed data is needed so that the Genotype QC wizard can compare the new data with existing data.

The implementation should be changed so that all data is included when demuxing is started via auto-confirm.

The workaround is to manually start a second demux and de-select the Exlude libraries marked with DoNotUse option. This will create new merged items also for the other libraries, but the can easily be deleted. Start the demux without the auto-confirm option enabled.

Change History (1)

comment:1 by Nicklas Nordborg, 4 years ago

Resolution: fixed
Status: newclosed

In 5983:

Fixes #1260: Demux started via auto-confirm should include items with DoNotUse flag

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