Demux started via auto-confirm should include items with DoNotUse flag
|Reported by:||Nicklas Nordborg||Owned by:||Nicklas Nordborg|
In ticket #1054  a function was added to the demux wizard that exclude items that have been marked with
DoNotUse from the demux. While it was possible to override this when starting the demux manually the auto-confirmation from sequencing always excluded such items.
Initially this was not a problem since new items are never marked as
DoNotUse. But this changed with ticket #1217 which copy the
DoNotUse flag to child items. This will cause problems when re-processing from an RNA or Lysate (for example) which is marked as
DoNotUse and the re-processing is made in order to resolve a specific issue. The demuxed data is needed so that the Genotype QC wizard can compare the new data with existing data.
The implementation should be changed so that all data is included when demuxing is started via auto-confirm.
The workaround is to manually start a second demux and de-select the
Exlude libraries marked with DoNotUse option. This will create new merged items also for the other libraries, but the can easily be deleted. Start the demux without the auto-confirm option enabled.