Opened 16 years ago

Closed 16 years ago

#117 closed task (fixed)

Create average nomralization plug-in

Reported by: Jari Häkkinen Owned by: Martin Svensson
Priority: major Milestone: Normalization package v1.0
Component: net.sf.basedb.normalizers Keywords:
Cc:

Description


Change History (10)

comment:1 by Martin Svensson, 16 years ago

(In [729]) References #117 Almost done with implementing the normalization algorithm for this plugin

comment:2 by Martin Svensson, 16 years ago

(In [730]) References #117 Average normalization plug-in is almost done. The plug-in cannot handle two-channel data, the implementation needs to be verified and tested.

comment:3 by Martin Svensson, 16 years ago

Milestone: ZZ Other tickets → Normalization package

comment:4 by Martin Svensson, 16 years ago

Component: net.sf.basedb.examples.extensions → net.sf.basedb.normalizations

comment:5 by Martin Svensson, 16 years ago

Status: new → assigned

comment:6 by Martin Svensson, 16 years ago

(In [742]) References #117 Cleaned up and refactored the classes. The Avg.norm. plug-in does not yet do any normalization.

comment:7 by Martin Svensson, 16 years ago

(In [743]) References #117 The normalization is now done. Nothing has been tested yet. Also added a new interface and two new classes to hold the spot data when it is picked out from the database.

comment:8 by Martin Svensson, 16 years ago

(In [744]) References #117 Corrected a package name. Also changed the way global average intensity is calculated in the AverageNormalization plug-in. It is now calculated by the database instead of the plug-in.

comment:9 by Martin Svensson, 16 years ago

(In [745]) References #117 Bug-fixing

comment:10 by Martin Svensson, 16 years ago

Resolution: → fixed
Status: assigned → closed

(In [748]) Fixes #117 Create average nomralization plug-in.

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