Opened 5 years ago
Closed 5 years ago
#1017 closed enhancement (fixed)
Remove code for handling optional MaskedSequences
| Reported by: | Nicklas Nordborg | Owned by: | Nicklas Nordborg |
|---|---|---|---|
| Priority: | major | Milestone: | Reggie v4.16 |
| Component: | net.sf.basedb.reggie | Keywords: | |
| Cc: |
Description (last modified by )
When the masking step has been introduced to the Hisat pipeline again (see #1015), all places in the code that works with MaskedSequences can be simplified since we no longer need to consider two different cases.
The "Delete unmasked Hisat alignments" wizard can also be removed.
Change History (6)
comment:1 Changed 5 years ago by
| Description: | modified (diff) |
|---|
comment:2 Changed 5 years ago by
| Milestone: | Reggie v4.x → Reggie v4.16 |
|---|
comment:3 Changed 5 years ago by
| Status: | new → assigned |
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comment:4 Changed 5 years ago by
comment:5 Changed 5 years ago by
(In [4686]) References #1017: Remove code for handling optional MaskedSequences?
Removed the "Delete unmasked Hisat alignments" wizard.
comment:6 Changed 5 years ago by
| Resolution: | → fixed |
|---|---|
| Status: | assigned → closed |
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(In [4685]) References #1017: Remove code for handling optional MaskedSequences?
Removed handling of the case where no masked item exists between the aligned and merged sequences.