wiki:net.sf.basedb.reggie

Version 52 (modified by Nicklas Nordborg, 5 years ago) (diff)

Released Reggie 2.13-beta-2

Reggie extension for BASE

This package is an extension package to BASE that makes it easier to register biosources and samples.

Documentation

  • The README contains information about this package, how to install it and how to compile it.

License

GNU General Public License version 3.

Download

Version Revision Date Binary (tar.gz) BASE Version Special notes
2.13-beta-2 2096 October 23, 2013 reggie-2.13-beta-2.tar.gz (615kB) 3.2.2 or later update notes changelog
2.13-beta-1 2071 October 15, 2013 reggie-2.13-beta-1.tar.gz (610kB) 3.2.2 or later update notes changelog
2.12 2018 September 9, 2013 reggie-2.12.tar.gz (532kB) 3.2.2 or later changelog
2.11.1 1879 February 22, 2013 reggie-2.11.1.tar.gz (349kB) 3.2.0 or later changelog
2.11 1862 February 19, 2013 reggie-2.11.tar.gz (348kB) 3.2.0 or later changelog
2.10.2 1798 January 9, 2013 reggie-2.10.2.tar.gz (294kB) 3.2.0 or later changelog
2.10.1 1786 December 13, 2012 reggie-2.10.1.tar.gz (294kB) 3.2.0 or later changelog
2.10 1780 December 12, 2012 reggie-2.10.tar.gz (293kB) 3.2.0 or later update notes changelog
2.9 1753 November 28, 2012 reggie-2.9.tar.gz (313kB) 3.1.0 or later update notes changelog
2.8 1724 September 24, 2012 reggie-2.8.tar.gz (273kB) 3.1.0 or later changelog
2.7 1714 August 30, 2012 reggie-2.7.tar.gz (272kB) 3.1.0 or later update notes changelog
2.6 1664 May 22, 2012 reggie-2.6.tar.gz (246kB) 3.1.0 or later changelog
2.5 1632 April 27, 2012 reggie-2.5.tar.gz (212kB) 3.1.0 or later update notes changelog
2.4 1618 April 25, 2012 reggie-2.4.tar.gz (193kB) 3.0.0 or later changelog
2.3 1535 February 14, 2012 reggie-2.3.tar.gz (124kB) 3.0.0 or later changelog
2.2 1528 January 25, 2012 reggie-2.2.tar.gz (122kB) 3.0.0 or later changelog
2.1 1506 January 18, 2012 reggie-2.1.tar.gz (102kB) 3.0.0 or later changelog
2.0.1 1486 November 30, 2011 reggie-2.0.1.tar.gz (89kB) 3.0.0 or later changelog
2.0 1465 November 14, 2011 reggie-2.0.tar.gz (89kB) 3.0.0 or later changelog
1.6 1462 November 14, 2011 reggie-1.6.tar.gz (85kB) 2.17.1 or later changelog
1.5 1377 June 17, 2011 reggie-1.5.tar.gz (66kB) 2.17.1 or later changelog
1.4 1364 May 16, 2011 reggie-1.4.tar.gz (58kB) 2.17.1 or later changelog
1.3 1356 April 28, 2011 reggie-1.3.tar.gz (72kB) 2.16.0 or later changelog
1.2 1339 April 11, 2011 reggie-1.2.tar.gz (63kB) 2.16.0 or later changelog
1.1 1323 March 21, 2011 reggie-1.1.tar.gz (43kB) 2.16.0 or later changelog
1.0 1314 March 7, 2011 reggie-1.0.tar.gz (42kB) 2.16.0 or later changelog

The latest development (maybe unstable; do not use on a production server) revision can be checked out from the repository using the following command:

svn co http://baseplugins.thep.lu.se/svn/extensions/net.sf.basedb.reggie/trunk reggie-devel

Contribute

After making modifications to the source code, compose a clear and concise log message to describe those changes and the reasons for them. Then, send an email to the developers list containing your log message and the output of svn diff (from the top of your subversion working copy). If the community members consider your changes acceptable, someone who has commit privileges will add your changes to the public source code tree. Recall that permission to directly commit changes to the repository is granted on merit - if you demonstrate comprehension of subversion, programming competency, and a team spirit, you will likely be awarded that permission.

Todo

#413
Handle re-running a sample on Caliper with Hi-Sense option
#476
Get list of blood samples where at least one RNA extract exists
#510
Consistent use of terms in the lab protocols and Reggie interface
#532
reggie QC wizard for additional QC measurements outside of routine
#584
Make it possible to use different volumes for different RNA in Create mRNA plate wizard
#585
Cluster start date shold be a date+time annotation
#586
Register end date+time for clustering
#695
New reporter annotations
#752
Schedule new RNAQC from Flagged RNA wizard
#919
Include information about deliverd reports in case summary
#1119
Re-implement TIFF to JPG conversion for Histology images using the ImageIO API
#1120
Remove Apache POI from distribution
#1129
DNA pre-normalization
#1130
External RNA/DNA import wizard
#1131
Switch to BASE 3.15
#1133
Re-organize the Reggie front page
#1134
Implement an "Activity log"

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