Version 11 (modified by Martin Svensson, 8 years ago) (diff)

Update readme-link

Reggie extension for BASE

This package is an extension package to BASE that makes it easier to register biosources and samples.


  • The README contains information about this package, how to install it and how to compile it.


GNU General Public License version 3.


Version Revision Date Binary (tar.gz) BASE Version
1.4 1364 May 16, 2011 reggie-1.4.tar.gz (58kB) 2.17.1 or later changelog
1.3 1356 April 28, 2011 reggie-1.3.tar.gz (72kB) 2.16.0 or later changelog
1.2 1339 April 11, 2011 reggie-1.2.tar.gz (63kB) 2.16.0 or later changelog
1.1 1323 March 21, 2011 reggie-1.1.tar.gz (43kB) 2.16.0 or later changelog
1.0 1314 March 7, 2011 reggie-1.0.tar.gz (42kB) 2.16.0 or later changelog

The latest development (maybe unstable; do not use on a production server) revision can be checked out from the repository using the following command:

svn co reggie-devel


After making modifications to the source code, compose a clear and concise log message to describe those changes and the reasons for them. Then, send an email to the developers list containing your log message and the output of svn diff (from the top of your subversion working copy). If the community members consider your changes acceptable, someone who has commit privileges will add your changes to the public source code tree. Recall that permission to directly commit changes to the repository is granted on merit - if you demonstrate comprehension of subversion, programming competency, and a team spirit, you will likely be awarded that permission.


Handle re-running a sample on Caliper with Hi-Sense option
Get list of blood samples where at least one RNA extract exists
Consistent use of terms in the lab protocols and Reggie interface
reggie QC wizard for additional QC measurements outside of routine
Make it possible to use different volumes for different RNA in Create mRNA plate wizard
Cluster start date shold be a date+time annotation
Register end date+time for clustering
New reporter annotations
Schedule new RNAQC from Flagged RNA wizard
Include information about deliverd reports in case summary
Re-implement TIFF to JPG conversion for Histology images using the ImageIO API
Demux for the MIPs pipeline
Case summary changes due to MIPs pipeline
Release exporter changes due to MIPs pipeline
Add support for using 'M' in the read-string when demuxing

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