wiki:net.sf.basedb.genepattern

Version 3 (modified by Nicklas Nordborg, 15 years ago) ( diff )

Added some information about the package

GenePattern integration with BASE

This package is an extensions/plug-in package to BASE that integrates BASE with GenePattern. Some of the features:

  • Export experimental data in various GenePattern file formats.
  • Run jobs on a GenePattern server using files from BASE. Module parameters are entered in the BASE web interface.
  • Start GenePattern visualizer modules with files from BASE.

More information

License

GNU General Public License version 3.

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This package is not yet released.

Contribute

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Todo

#218
Proof-of-concept: run a selected GenePattern module from BASE
#219
Setup a GenePattern server for testing
#229
Implement API for additional GenePattern web services
#234
Proof-of-concept: run a selected GenePattern visualization module from BASE

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