GenePattern integration with BASE

This package is an extensions/plug-in package to BASE that integrates BASE with GenePattern. Some of the features:

  • Export experimental data in various GenePattern file formats.
  • Run jobs on a GenePattern server using files from BASE. Module parameters are entered in the BASE web interface.
  • Start GenePattern visualizer modules with files from BASE.

More information


GNU General Public License version 3.


This package is not yet released.


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Proof-of-concept: run a selected GenePattern module from BASE
Setup a GenePattern server for testing
Implement API for additional GenePattern web services
Proof-of-concept: run a selected GenePattern visualization module from BASE

Last modified 9 years ago Last modified on Jun 24, 2009, 1:01:08 PM