wiki:net.sf.basedb.genepattern

GenePattern integration with BASE

This package is an extensions/plug-in package to BASE that integrates BASE with GenePattern. Some of the features:

  • Export experimental data in various GenePattern file formats.
  • Run jobs on a GenePattern server using files from BASE. Module parameters are entered in the BASE web interface.
  • Start GenePattern visualizer modules with files from BASE.

More information

License

GNU General Public License version 3.

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This package is not yet released.

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After making modifications to the source code, compose a clear and concise log message to describe those changes and the reasons for them. Then, send an email to the developers list containing your log message and the output of svn diff (from the top of your subversion working copy). If the community members consider your changes acceptable, someone who has commit privileges will add your changes to the public source code tree. Recall that permission to directly commit changes to the repository is granted on merit - if you demonstrate comprehension of subversion, programming competency, and a team spirit, you will likely be awarded that permission.

Todo

#218
Proof-of-concept: run a selected GenePattern module from BASE
#219
Setup a GenePattern server for testing
#229
Implement API for additional GenePattern web services
#234
Proof-of-concept: run a selected GenePattern visualization module from BASE

Last modified 8 years ago Last modified on Jun 24, 2009, 1:01:08 PM