Timeline



Dec 8, 2015:

1:38 PM Changeset [3655] by olle
Refs #801. Refs #816. Updates due to version number change to …
1:26 PM Changeset [3654] by olle
Refs #801. Refs #816. Updates due to version number change to …
12:51 PM Changeset [3653] by olle
Refs #801. Refs #816. Wizard "Inspect/edit library preparation kit …
11:10 AM Changeset [3652] by olle
Refs #801. Refs #816. A new wizard, "Inspect start DNA plate", added …

Dec 7, 2015:

2:39 PM Changeset [3651] by Nicklas Nordborg
References #826: Auto-create mRNA plate wizard Re-factored code for …

Dec 4, 2015:

9:02 AM Changeset [3650] by olle
Refs #801. Refs #816. Updates due to version number change to …
8:56 AM Changeset [3649] by olle
Refs #801. Refs #816. Updates due to version number change to …
8:47 AM Changeset [3648] by olle
Refs #801. Refs #816. Wizard "Create new start DNA plate" in section …
7:38 AM Changeset [3647] by olle
Refs #801. Refs #816. Wizard "Add new consumables lot number file" in …

Dec 3, 2015:

4:38 PM Changeset [3646] by olle
Refs #801. Refs #816. Wizard "Add new library preparation kit" in …
2:08 PM Changeset [3645] by Nicklas Nordborg
References #826: Auto-create mRNA plate wizard Added "auto-design" …
12:13 PM Changeset [3644] by olle
Refs #801. Refs #816. Wizard "Create new start DNA plate" in section …
10:48 AM Changeset [3643] by olle
Refs #801. Refs #816. Wizard "Create new start DNA plate" in section …

Dec 2, 2015:

12:39 PM Changeset [3642] by olle
Refs #801. Refs #816. MeLuDI index page updated: a. MeLuDI …
12:21 PM Changeset [3641] by olle
Refs #801. Refs #816. Since protocol and kit can be set for bioplate …
11:41 AM Ticket #832 (Specimen tube registration wizard should create new storage boxes) closed by Nicklas Nordborg
fixed: (In [3640]) Fixes #832: Specimen tube registration wizard should …
11:41 AM Changeset [3640] by Nicklas Nordborg
Fixes #832: Specimen tube registration wizard should create new …
9:18 AM Changeset [3639] by olle
Refs #801. Refs #816. Wizard "Register new extra material" in …
9:00 AM Changeset [3638] by olle
Refs #801. Refs #816. Bug fixed in function isSpecimen(item) in …

Dec 1, 2015:

12:50 PM Changeset [3637] by olle
Refs #801. Refs #816. Functional specification update: * Wizard …
8:38 AM Changeset [3636] by Nicklas Nordborg
References #825: Optimize library preparation and sequencing wizards …
8:18 AM Ticket #832 (Specimen tube registration wizard should create new storage boxes) created by Nicklas Nordborg
Storage boxes for Specimen, Lysate, RNA, DNA and FlowThrough are …
7:59 AM net.sf.basedb.meludi.background_software_info edited by olle
Starting section 1.5 on pipeline management (diff)

Nov 30, 2015:

1:00 PM Changeset [3635] by Nicklas Nordborg
References #825: Optimize library preparation and sequencing wizards …
11:49 AM net.sf.basedb.reggie/notes40 edited by Nicklas Nordborg
Update installation notes for Reggie 4.0 (diff)
11:29 AM Changeset [3634] by Nicklas Nordborg
References #825: Optimize library preparation and sequencing wizards …
11:28 AM Changeset [3633] by Nicklas Nordborg
References #825: Optimize library preparation and sequencing wizards …
11:17 AM Changeset [3632] by Nicklas Nordborg
References #825: Optimize library preparation and sequencing wizards …

Nov 27, 2015:

2:33 PM Changeset [3631] by olle
Refs #801. Refs #816. Wizard "Create new start DNA plate" in …
12:20 PM Changeset [3630] by olle
Refs #801. Refs #816. In order to make it possible to add control …

Nov 26, 2015:

2:44 PM Changeset [3629] by Nicklas Nordborg
References #825: Optimize library preparation and sequencing wizards …
12:39 PM Changeset [3628] by olle
Refs #801. Refs #816. Wizard "Create new start DNA plate" in …
11:49 AM Changeset [3627] by olle
Refs #801. Refs #816. When LibPrepServlet protected method `void …
11:02 AM Changeset [3626] by olle
Refs #801. Refs #816. Wizard "Create new start DNA plate" in …
8:15 AM Changeset [3625] by Nicklas Nordborg
References #825: Optimize library preparation and sequencing wizards …

Nov 25, 2015:

3:28 PM Changeset [3624] by olle
Refs #801. Refs #816. Wizard "Create new start DNA plate" in …
2:01 PM Changeset [3623] by Nicklas Nordborg
References #825: Optimize library preparation and sequencing wizards …
1:15 PM Changeset [3622] by Nicklas Nordborg
References #825: Optimize library preparation and sequencing wizards …
8:35 AM Changeset [3621] by olle
Refs #801. Refs #816. Wizard "Create new start DNA plate" in …

Nov 24, 2015:

8:52 AM Changeset [3620] by Nicklas Nordborg
References #830: Link software items to gene and pilot report pdf …

Nov 23, 2015:

4:22 PM Changeset [3619] by olle
Refs #801. Refs #816. Wizard "Create new start DNA plate" in …
2:28 PM Changeset [3618] by Nicklas Nordborg
References #830: Link software items to gene and pilot report pdf …
9:49 AM Changeset [3617] by olle
Refs #801. Refs #816. Wizard "Create new start DNA plate" in …
9:32 AM Changeset [3616] by Nicklas Nordborg
References #830: Link software items to gene and pilot report pdf …

Nov 20, 2015:

4:14 PM Changeset [3615] by olle
Refs #801. Refs #816. Wizard "Create new start DNA plate" in …
12:10 PM Changeset [3614] by olle
Refs #801. Refs #816. Wizard "Create new start DNA plate" in …
10:02 AM Changeset [3613] by olle
Refs #801. Refs #816. Wizard "Create new start DNA plate" in …
9:46 AM Ticket #829 (Display RNA box position in the lab protocol from "Create aliquots on ...) closed by Nicklas Nordborg
fixed: (In [3612]) Fixes #829: Display RNA box position in the lab protocol …
9:46 AM Changeset [3612] by Nicklas Nordborg
Fixes #829: Display RNA box position in the lab protocol from "Create …
9:16 AM Ticket #824 (fix_tophat_unmapped_reads.py has been renamed to tophat-recondition.py) closed by Nicklas Nordborg
fixed: (In [3611]) Fixes #824: fix_tophat_unmapped_reads.py has been renamed …
9:16 AM Changeset [3611] by Nicklas Nordborg
Fixes #824: fix_tophat_unmapped_reads.py has been renamed to …
8:43 AM Changeset [3610] by olle
Refs #801. Refs #816. MeLuDI library preparation wizards updated to …

Nov 19, 2015:

10:59 AM Changeset [3609] by olle
Refs #801. Refs #816. Wizard "Add new consumables lot number file" …

Nov 18, 2015:

8:52 AM Changeset [3608] by olle
Refs #801. Refs #816. Wizard "Inspect/edit library preparation kit …

Nov 17, 2015:

8:23 AM Ticket #785 (Separate project archive folder for external samples) closed by Nicklas Nordborg
fixed
8:19 AM Changeset [3607] by Nicklas Nordborg
References #785: Separate project archive folder for external samples …

Nov 16, 2015:

2:37 PM Changeset [3606] by Nicklas Nordborg
References #785: Separate project archive folder for external samples …
2:01 PM Changeset [3605] by Nicklas Nordborg
References #785: Separate project archive folder for external samples …
1:40 PM Ticket #831 (Losing connection to Open grid cluster) closed by Nicklas Nordborg
fixed: (In [3604]) Fixes #831: Losing connection to Open grid cluster
1:40 PM Changeset [3604] by Nicklas Nordborg
Fixes #831: Losing connection to Open grid cluster
1:22 PM Ticket #831 (Losing connection to Open grid cluster) created by Nicklas Nordborg
[…] On my development machine I get the above error message after …
10:56 AM Ticket #823 (Do not include items with only Read permission in selection lists) closed by Nicklas Nordborg
fixed: (In [3603]) Fixes #823: Do not include items with only Read permission …
10:56 AM Changeset [3603] by Nicklas Nordborg
Fixes #823: Do not include items with only Read permission in …
9:47 AM Ticket #827 (Implement support for YellowLabel in the specimen tube registration wizard) closed by Nicklas Nordborg
fixed: (In [3602]) Fixes #827: Implement support for YellowLabel? in the …
9:47 AM Changeset [3602] by Nicklas Nordborg
Fixes #827: Implement support for YellowLabel? in the specimen tube …

Nov 13, 2015:

3:03 PM Changeset [3601] by Nicklas Nordborg
References #785: Separate project archive folder for external samples …
2:00 PM net.sf.basedb.reggie/notes40 created by Nicklas Nordborg
First version of update notes for Reggie 4.0 (moving external files to …
1:13 PM Changeset [3600] by Nicklas Nordborg
References #785: Separate project archive folder for external samples …

Nov 12, 2015:

2:46 PM Ticket #830 (Link software items to gene and pilot report pdf files) created by Nicklas Nordborg
When starting the gene report and pilot report wizards it should be …
2:41 PM Changeset [3599] by olle
Refs #801. Refs #816. Updates due to version number change to …
2:34 PM Changeset [3598] by olle
Refs #801. Refs #816. Updates due to version number change to …
2:29 PM Ticket #829 (Display RNA box position in the lab protocol from "Create aliquots on ...) created by Nicklas Nordborg
Similar to #817.
2:12 PM Changeset [3597] by olle
Refs #816. Wizard "Create label file for a number of new cases" in …
1:45 PM Changeset [3596] by olle
Refs #801. Refs #816. Wizard "Create new start DNA plate" updated in …
10:40 AM Ticket #828 (PoolSchema=1by16offset is not installed by the installation wizard) closed by Nicklas Nordborg
fixed: (In [3595]) Fixes #828: PoolSchema?=1by16offset is not installed by the …
10:40 AM Changeset [3595] by Nicklas Nordborg
Fixes #828: PoolSchema?=1by16offset is not installed by the …
9:57 AM Changeset [3594] by olle
Refs #801. Refs #816. Wizard "Create new start DNA plate" updated in …
9:44 AM Changeset [3593] by olle
Refs #801. Refs #816. Wizard "Create new start DNA plate" updated in …
9:02 AM Changeset [3592] by olle
Refs #801. Refs #816. Wizard "Create new start DNA plate" updated …

Nov 11, 2015:

4:47 PM Changeset [3591] by olle
Refs #816. Wizard "Lab tracking protocol for FFPE extraction" in …
2:49 PM Ticket #828 (PoolSchema=1by16offset is not installed by the installation wizard) created by Nicklas Nordborg
Trying to use the new Pool schema '1by16offset' that was implemented …
1:47 PM Changeset [3590] by olle
Refs #801. Refs #816. Wizard "Create new start DNA plate" updated …
12:09 AM Changeset [3589] by Jari Häkkinen
Restoring svn:eol-style to LF

Nov 10, 2015:

2:42 PM Changeset [3588] by Nicklas Nordborg
Updated Reggie version to 4.0-dev
2:01 PM Ticket #827 (Implement support for YellowLabel in the specimen tube registration wizard) created by Nicklas Nordborg
This is part 1 of #771. The specimen tube registration wizard should …
1:50 PM Ticket #826 (Auto-create mRNA plate wizard) created by Nicklas Nordborg
While the current create mRNA plate wizard is powerful it is also …
1:31 PM Ticket #825 (Optimize library preparation and sequencing wizards for NextSeq) created by Nicklas Nordborg
Several wizards in the library preparation and sequencing sections was …
8:25 AM Changeset [3587] by olle
Refs #816. Bug fixed in default cell text in extraction protocol table …

Nov 9, 2015:

5:28 PM Changeset [3586] by Jari Häkkinen
Fixing svn:eol-style
5:24 PM Changeset [3585] by Jari Häkkinen
Updating post-alingment script to latest released version. The script …
3:42 PM Changeset [3584] by Jari Häkkinen
Fixing svndigest&svncopyright properties
3:38 PM Changeset [3583] by Jari Häkkinen
Fixing Id keyword
1:21 PM Ticket #824 (fix_tophat_unmapped_reads.py has been renamed to tophat-recondition.py) created by Nicklas Nordborg
The fix_tophat_unmapped_reads.py script is used in the alignment …
1:18 PM Ticket #823 (Do not include items with only Read permission in selection lists) created by Nicklas Nordborg
In several Reggie wizards it is possible to select protocol, hardware …
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