Opened 3 years ago

Closed 3 years ago

#824 closed enhancement (fixed)

fix_tophat_unmapped_reads.py has been renamed to tophat-recondition.py

Reported by: nicklas Owned by: nicklas
Priority: minor Milestone: Reggie v4.0
Component: net.sf.basedb.reggie Keywords:
Cc:

Description

The fix_tophat_unmapped_reads.py script is used in the alignment step. It has been updated to a new version and has been renamed to tophat-recondition.py. It also requires some different parameters:

# Old call
fix_tophat_unmapped_reads.py <folder>

# New call
tophat-recondition.py -l /dev/null -q <folder>

Change History (4)

comment:1 Changed 3 years ago by jari

comment:2 Changed 3 years ago by nicklas

  • Milestone changed from Reggie v3.8 to Reggie v4.0

Milestone renamed

comment:3 Changed 3 years ago by nicklas

  • Status changed from new to assigned

comment:4 Changed 3 years ago by nicklas

  • Resolution set to fixed
  • Status changed from assigned to closed

(In [3611]) Fixes #824: fix_tophat_unmapped_reads.py has been renamed to tophat-recondition.py

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