Timeline


and

Jun 26, 2015:

12:53 PM net.sf.basedb.thumbnails edited by nicklas
(diff)
12:49 PM Milestone Thumbnails v1.0 completed
Extension for displaying thumbnails images and other files in the file …
12:49 PM net.sf.basedb.thumbnails edited by nicklas
README should point to the tagged version (diff)
12:47 PM PluginDownload edited by nicklas
Released Thumbnails 1.0 (diff)
12:44 PM net.sf.basedb.thumbnails edited by nicklas
Released Thumbnails 1.0 (diff)
12:40 PM thumbnails-1.0.tar.gz attached to net.sf.basedb.thumbnails by nicklas
Thumbnails 1.0
12:38 PM Changeset [3429] by nicklas
Tagging Thumbnails 1.0
12:37 PM Changeset [3428] by nicklas
Preparing to release Thumbnails 1.0
11:49 AM Ticket #793 (Implement thumbnails for PNG and JPG images) closed by nicklas
fixed
11:48 AM net.sf.basedb.thumbnails/install edited by nicklas
Adding note about Java 8 (diff)
11:46 AM net.sf.basedb.thumbnails edited by nicklas
Adding note about Java 8 (diff)
11:44 AM net.sf.basedb.thumbnails/using created by nicklas
Created page about using the thumbnails extension
11:34 AM net.sf.basedb.thumbnails edited by nicklas
Listing support file formats (diff)
11:32 AM net.sf.basedb.thumbnails/install edited by nicklas
(diff)
11:32 AM net.sf.basedb.thumbnails/install created by nicklas
Creating installation instructions page
11:30 AM net.sf.basedb.thumbnails edited by nicklas
Adding links to documentation pages (diff)
11:26 AM Changeset [3427] by nicklas
References #770: Retraction wizard - Step 3: Destruction Checking …

Jun 25, 2015:

1:28 PM Changeset [3426] by nicklas
References #793: Implement thumbnails for PNG and JPG images Fixes a …
11:39 AM Changeset [3425] by nicklas
References #770: Retraction wizard - Step 3: Destruction Cleaned up a …
8:16 AM Ticket #800 (Add counter for total number of scored histology samples) closed by nicklas
fixed: (In [3424]) Fixes #800: Add counter for total number of scored …
8:16 AM Changeset [3424] by nicklas
Fixes #800: Add counter for total number of scored histology samples
8:08 AM Ticket #800 (Add counter for total number of scored histology samples) created by nicklas
In the top left table with counters for various items it would be nice …

Jun 24, 2015:

4:29 PM Changeset [3423] by olle
Refs #792. In order for case summary to work for extra material items …
2:35 PM Changeset [3422] by nicklas
References #795: Display image thumbnails in list view for stained …
2:34 PM Changeset [3421] by nicklas
References #793: Implement thumbnails for PNG and JPG images Add a …
1:37 PM Ticket #798 (Display thumbnail of gene report pdf in raw bioassays list and view page) closed by nicklas
fixed: (In [3420]) Fixes #798: Display thumbnail of gene report pdf in raw …
1:37 PM Changeset [3420] by nicklas
Fixes #798: Display thumbnail of gene report pdf in raw bioassays list …
12:50 PM Ticket #799 (TypeError: bestStain is null in case summary) closed by nicklas
fixed: (In [3419]) Fixes #799: TypeError?: bestStain is null in case summary …
12:50 PM Changeset [3419] by nicklas
Fixes #799: TypeError?: bestStain is null in case summary It was a bug …
12:38 PM Ticket #799 (TypeError: bestStain is null in case summary) created by nicklas
Seems like it happens for cases that not yet been stained or is …
10:49 AM Ticket #798 (Display thumbnail of gene report pdf in raw bioassays list and view page) created by nicklas
More or less the same as #795 and #796 but in this case we check the …
10:44 AM Changeset [3418] by olle
Refs #792. Data access object class/file SpecimenTube.java in …
9:41 AM Ticket #797 (Implement thumbnails for PDF documents) closed by nicklas
fixed: (In [3417]) Fixes #797: Implement thumbnails for PDF documents The …
9:41 AM Changeset [3417] by nicklas
Fixes #797: Implement thumbnails for PDF documents The Apache PDF box …
7:49 AM Ticket #797 (Implement thumbnails for PDF documents) created by nicklas
https://java.net/projects/pdf-renderer or https://pdfbox.apache.org/

Jun 23, 2015:

12:39 PM Ticket #796 (Filter on image present/not present for stained samples) closed by nicklas
fixed
12:37 PM Changeset [3416] by olle
Refs #792. Java servlet classes/files updated by referring to a single …
12:35 PM Ticket #790 (Add new site: Jönköping) closed by nicklas
fixed: (In [3415]) Fixes #790: Add new site: Jönköping
12:35 PM Changeset [3415] by nicklas
Fixes #790: Add new site: Jönköping
11:58 AM Changeset [3414] by olle
Refs #792. Lab tracking protocol for Allprep isolation wizard updated …
11:06 AM Changeset [3413] by olle
Refs #792. Lab tracking protocol for Allprep isolation wizard updated …

Jun 22, 2015:

2:51 PM Changeset [3412] by olle
Refs #792. MeLuDI updated by adding registration of extra material: …

Jun 18, 2015:

2:53 PM Changeset [3411] by nicklas
References #795 and #796: Display image thumbnails in list view for …
8:18 AM Changeset [3410] by nicklas
References #795: Display image thumbnails in list view for stained …
8:15 AM Changeset [3409] by nicklas
References #793: Implement thumbnails for PNG and JPG images …

Jun 17, 2015:

1:28 PM Changeset [3408] by olle
Refs #792. One new site, "Trelleborg", added, belonging to RCC-syd: …

Jun 16, 2015:

2:43 PM Ticket #796 (Filter on image present/not present for stained samples) created by nicklas
Ticket #795 added a column displaying a thumbnail of the histology …
2:32 PM Ticket #795 (Display image thumbnails in list view for stained samples) closed by nicklas
fixed: (In [3407]) Fixes #795: Display image thumbnails in list view for …
2:32 PM Changeset [3407] by nicklas
Fixes #795: Display image thumbnails in list view for stained samples
2:12 PM Ticket #795 (Display image thumbnails in list view for stained samples) created by nicklas
Ticket #791 added support for uploading histology images to BASE. It …
1:30 PM Ticket #794 (Improve visual difference between samples missing/having IHC annotation) closed by nicklas
fixed: (In [3406]) Fixes #794: Improve visual difference between samples …
1:30 PM Changeset [3406] by nicklas
Fixes #794: Improve visual difference between samples missing/having …
1:29 PM Ticket #794 (Improve visual difference between samples missing/having IHC annotation) created by nicklas
In the Histology scoring wizard a "star" icon is used to indicate the …
1:00 PM Changeset [3405] by nicklas
References #793: Implement thumbnails for PNG and JPG images Catch …
11:24 AM Changeset [3404] by nicklas
References #793: Implement thumbnails for PNG and JPG images Only …
9:39 AM Changeset [3403] by nicklas
References #793: Implement thumbnails for PNG and JPG images Added a …

Jun 15, 2015:

2:35 PM Changeset [3402] by nicklas
References #793: Implement thumbnails for PNG and JPG images Making …
2:14 PM Changeset [3401] by nicklas
References #793: Implement thumbnails for PNG and JPG images Added …
12:40 PM Changeset [3400] by nicklas
References #793: Implement thumbnails for PNG and JPG images Added …
9:38 AM Changeset [3399] by nicklas
References #793: Implement thumbnails for PNG and JPG images First …
8:35 AM Ticket #793 (Implement thumbnails for PNG and JPG images) created by nicklas
8:34 AM Changeset [3398] by nicklas
Initial checkin of Thumbnails extension. It should compile and install …
7:52 AM Changeset [3397] by nicklas
Creating tags folder for 'net.sf.basedb.thumbnails'.
7:51 AM Changeset [3396] by nicklas
Creating trunk folder for 'net.sf.basedb.thumbnails'.
7:51 AM Changeset [3395] by nicklas
Creating root folder for 'net.sf.basedb.thumbnails'.
7:49 AM net.sf.basedb.thumbnails created by nicklas

Jun 12, 2015:

1:49 PM Ticket #772 (New sample annotation (LinkedSpecimen) to highlight prior specimen) closed by nicklas
fixed: (In [3394]) Fixes #772: New sample annotation (LinkedSpecimen?) to …
1:49 PM Changeset [3394] by nicklas
Fixes #772: New sample annotation (LinkedSpecimen?) to highlight prior …

Jun 11, 2015:

11:08 AM Changeset [3393] by nicklas
References #770: Retraction wizard - Step 3: Destruction Fixing issue …
11:04 AM Changeset [3392] by nicklas
References #770: Retraction wizard - Step 3: Destruction Remove …
11:03 AM Changeset [3391] by nicklas
References #770: Retraction wizard - Step 3: Destruction Finding …
8:53 AM Changeset [3390] by nicklas
References #770: Retraction wizard - Step 3: Destruction Changed …
8:19 AM Changeset [3389] by nicklas
References #770: Retraction wizard - Step 3: Destruction Adding …
8:13 AM Changeset [3388] by nicklas
References #770: Retraction wizard - Step 3: Destruction Using a …

Jun 10, 2015:

1:52 PM Changeset [3387] by nicklas
References #770: Retraction wizard - Step 3: Destruction Load files …
1:37 PM Changeset [3386] by nicklas
References #770: Retraction wizard - Step 3: Destruction The …
11:47 AM Changeset [3385] by olle
Refs #792. MeLuDI updated to be able to be used with BASE version 3.5. …
11:19 AM Changeset [3384] by olle
Refs #792. MeLuDI updated to be able to be used with BASE version 3.5. …
9:29 AM Changeset [3383] by nicklas
Updating the release instructions to specify that a new checkout of …
9:05 AM Changeset [3382] by nicklas
References #770: Retraction wizard - Step 3: Destruction Enabling …
8:27 AM net.sf.basedb.reggie/HistoryOfReggie edited by nicklas
Adding Reggie 3.4 screenshot (diff)
8:25 AM reggie-3.4.png attached to net.sf.basedb.reggie/HistoryOfReggie by nicklas
Reggie 3.4

Jun 9, 2015:

4:41 PM Changeset [3381] by olle
Refs #792. Ant build and other configuration files updated to require …
4:21 PM Changeset [3380] by olle
Refs #792. Configuration file extensions.xml in META-INF updated …
4:15 PM Changeset [3379] by olle
Refs #792. Updates due to version number change to "1.3-dev". 1. …
3:39 PM net.sf.basedb.reggie/notes34 edited by nicklas
(diff)
3:31 PM net.sf.basedb.reggie/notes34 edited by nicklas
(diff)
3:31 PM net.sf.basedb.reggie edited by nicklas
Adding link to update notes (diff)
2:53 PM Changeset [3378] by nicklas
Preparing for future release Reggie 3.5
2:52 PM Milestone Reggie v3.4 completed
See Reggie extension page for more information.
2:51 PM PluginDownload edited by nicklas
Released Reggie 3.4 (diff)
2:51 PM net.sf.basedb.reggie edited by nicklas
Released Reggie 3.4 (diff)
2:48 PM reggie-3.4.tar.gz attached to net.sf.basedb.reggie by nicklas
Reggie 3.4
2:48 PM Ticket #791 (Upload microscope images in the histology scoring wizard) closed by nicklas
fixed
2:46 PM Changeset [3377] by nicklas
Tagging Reggie 3.4
2:46 PM Changeset [3376] by nicklas
Preparing to release Reggie 3.4
2:44 PM Changeset [3375] by nicklas
References #770: Retraction wizard - Step 3: Destruction Disabling …
2:16 PM Ticket #780 (Redesign Reggie start page) closed by nicklas
fixed
2:16 PM Ticket #781 (Clean up code in retraction wizard) closed by nicklas
fixed
2:16 PM Ticket #787 (Add support for BloodDNA items) closed by nicklas
fixed
1:48 PM Changeset [3374] by nicklas
References #770 and #791. The retraction wizard (destruction step) …
9:57 AM Changeset [3373] by nicklas
References #791: Upload microscope images in the histology scoring …
9:26 AM Changeset [3372] by nicklas
References #791: Upload microscope images in the histology scoring …

Jun 8, 2015:

5:11 PM Ticket #792 (MeLuDI v.1.2.5 bug fixes and improvements) created by olle
This ticket covers bug fixes and improvements to MeLuDI v.1.2.5.
5:06 PM Milestone MeLuDI v1.2.5 completed
Updates of the MeLuDI extension to BASE, a package of registration …
5:06 PM Ticket #786 (MeLuDI v.1.2.4 bug fixes and improvements) closed by olle
fixed: Ticket closed as MeLuDI version 1.2.5 has been created.
5:04 PM net.sf.basedb.meludi edited by olle
Added information on MeLuDI 1.2.5 (diff)
4:50 PM PluginDownload edited by olle
Added information on MeLuDI 1.2.5 (diff)
4:41 PM meludi-1.2.5.tar.gz attached to net.sf.basedb.meludi by olle
MeLuDI BASE extension package version 1.2.5
4:37 PM Changeset [3371] by olle
Creating MeLuDI tag 1.2.5
4:21 PM Changeset [3370] by olle
Refs #786. Updates due to version number change to "1.2.5". 1. …
2:06 PM Changeset [3369] by nicklas
References #791: Upload microscope images in the histology scoring …
11:55 AM Changeset [3368] by nicklas
References #791: Upload microscope images in the histology scoring …

Jun 5, 2015:

1:37 PM Changeset [3367] by nicklas
References #791: Upload microscope images in the histology scoring …

Jun 4, 2015:

3:44 PM Ticket #791 (Upload microscope images in the histology scoring wizard) created by nicklas
We should implement an image upload feature in the Histology scoring …
3:35 PM Ticket #790 (Add new site: Jönköping) created by nicklas
Jönköping. Site prefix: 99 Start date: 2015-06-11
7:45 AM Ticket #728 (Get rid of SQLite) closed by nicklas
fixed: (In [3366]) Fixes #728: Get rid of SQLite Removed the SQLite jar file …
7:45 AM Changeset [3366] by nicklas
Fixes #728: Get rid of SQLite Removed the SQLite jar file and the …

Jun 3, 2015:

12:23 PM Changeset [3365] by olle
Refs #786. DNA/RNA extraction wizards updated to not allow editing the …

Jun 2, 2015:

4:12 PM Ticket #789 (LabEnv links in Case Summary do not work with BASE 3.5) closed by olle
fixed: The ticket is closed since the added update fixes the problem on the …
4:00 PM Changeset [3364] by olle
Refs #789. Calls of functions in removed BASE javascript library …
2:45 PM Ticket #789 (LabEnv links in Case Summary do not work with BASE 3.5) created by olle
Clicking on a LabEnv link for an item in the Case Summary opens up a …

Jun 1, 2015:

2:47 PM Changeset [3363] by olle
Refs #787. Retraction wizard updated in the destruction part by adding …
2:21 PM Ticket #788 (NullPointerException when registering libraries) closed by nicklas
fixed
2:18 PM Changeset [3362] by nicklas
References #788: NullPointerException? when registering libraries This …
11:37 AM Ticket #788 (NullPointerException when registering libraries) created by nicklas
Stacktrace is displayed when "Register" is clicked: […] …
9:38 AM Changeset [3361] by olle
Refs #787. Retraction wizard updated in information retrieval code to …

May 29, 2015:

2:15 PM Changeset [3360] by olle
Refs #787. Retraction wizard updated in the first step with support …
1:00 PM Changeset [3359] by olle
Refs #787. Retraction wizard was updated in registration part of the …
11:10 AM Changeset [3358] by olle
Refs #787. Retraction wizard was updated in the first step to support …

May 28, 2015:

1:13 PM Changeset [3357] by nicklas
References #787: Add support for BloodDNA items Adding file that …
1:10 PM Changeset [3356] by nicklas
References #787: Add support for BloodDNA items Adding "Blood DNA" …
8:32 AM Changeset [3355] by nicklas
References #787: Add support for BloodDNA items Create the BloodDNA

May 27, 2015:

4:18 PM Changeset [3354] by olle
Refs #786. Bug fixed in javascript refactoring leading to user-defined …
1:20 PM Ticket #787 (Add support for BloodDNA items) created by nicklas
BloodDNA items are child items (Extracts) to Blood samples. They …
Note: See TracTimeline for information about the timeline view.