Opened 4 years ago

Closed 4 years ago

#901 closed enhancement (fixed)

Set multiple paths for run-archive

Reported by: Nicklas Nordborg Owned by: Nicklas Nordborg
Priority: major Milestone: Reggie v4.6
Component: net.sf.basedb.reggie Keywords:
Cc:

Description

The disk with the run-archive files is full. A new disk is used for new sequencing runs but this is mounted under a different paths. It seems to not work to use symbolic links. While it is possible to change the <run-archive> setting to the new disk it would be nice to be able to also specify the other disk to search if the folder is not found in the new location (otherwise it will be messy to re-analyze old data).

Change History (5)

comment:1 Changed 4 years ago by Nicklas Nordborg

Status: newassigned

comment:2 Changed 4 years ago by Nicklas Nordborg

(In [4044]) References #901: Set multiple paths for run-archive

Added possibility to set add configuration options <run-archive-2>, <run-archive-3>, and so on in reggie-config.xml. The specified paths will be search in order in case no data files are found in the main run archive (<run-archive>).

This currently works in the following wizards:

  • Register sequencing ended ("Search" functionality)
  • Confirm sequencing completed ("Check data files" functionality)
  • Start demux and merge

The auto-analyze functionality can still only search the main run archive since it uses a different script than the other wizards.

comment:3 Changed 4 years ago by Nicklas Nordborg

(In [4045]) References #901: Set multiple paths for run-archive

Updated the script used by the "auto-analyze" functionality to get information about a NextSeq run with support for searching multiple run archive. The parameter order has been switched. The flow cell barcode should be given as the first parameter and then all paths to the run archive folders.

comment:4 Changed 4 years ago by Nicklas Nordborg

(In [4046]) References #901: Set multiple paths for run-archive

The "auto-analyze" functionality now has support for multiple run archives.

comment:5 Changed 4 years ago by Nicklas Nordborg

Resolution: fixed
Status: assignedclosed

Seems to work.

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