Opened 9 years ago
Last modified 9 years ago
#764 closed task
Support for neoprep in the library preparation — at Initial Version
| Reported by: | Nicklas Nordborg | Owned by: | Nicklas Nordborg |
|---|---|---|---|
| Priority: | major | Milestone: | Reggie v3.4 |
| Component: | net.sf.basedb.reggie | Keywords: | |
| Cc: |
Description
With the neoprep we will be able to go directly from RNA to libraries. We'll still have to register mRNA items to indicate what is going to be processed in a batch (typically 16 RNA).
We need to select barcodes in this step and specify a target molarity and fragment size for the final libraries.
Registration go directly to Libraries from the mRNA (skipping cDNA). No Caliper or Qubit files will be available. The information entered in the first step should be used instead.
We might have to create a new set of wizards to handle the neoprep path since it might be tricky to modify the existing wizard so they work with both the manual protocol and the neoprep.
Most downstream wizards will probably need more or less changes to be able to find information that they need.
