Opened 2 years ago

Closed 2 years ago

#1355 closed enhancement (fixed)

Implement dialog for listing variants for a single raw bioassay

Reported by: Nicklas Nordborg Owned by: Nicklas Nordborg
Priority: major Milestone: Variant Search v1.4
Component: net.sf.basedb.varsearch Keywords:
Cc:

Description

When there is no query for variants, the columns for displaying variant search results are used for displaying a count of the the number of variants for the raw bioassay. It would be nice to be able to open a popup dialog that list those variants (at least for the "filtered" and "targeted" indexes, it is less useful for the "all" column where there typically are several thousand variants).

It would also be nice to be able to link this dialog to file columns.

Change History (7)

comment:1 by Nicklas Nordborg, 2 years ago

In 6522:

References #1355: Implement dialog for listing variants for a single raw bioassay

The popup dialog has been implemented. We have re-used to implementation from the table listing for HTML generation since the display is very similar.

comment:2 by Nicklas Nordborg, 2 years ago

In 6523:

References #1355: Implement dialog for listing variants for a single raw bioassay

The popup dialog has been implemented. We have re-used to implementation from the table listing for HTML generation since the display is very similar.

comment:3 by Nicklas Nordborg, 2 years ago

In 6525:

References #1355: Implement dialog for listing variants for a single raw bioassay

Do not enable the popup dialog for the index with all variants since there are several thousands of them for each raw bioassays.

comment:4 by Nicklas Nordborg, 2 years ago

In 6526:

References #1355: Implement dialog for listing variants for a single raw bioassay

Implemented extension for displaying the dialog in relation to each VCF file. Note that this duplicates similar functionality that already exists in Reggie so it is recommended that this is disabled on the lorry server and only enabled on relax.

comment:5 by Nicklas Nordborg, 2 years ago

In 6527:

References #1355: Implement dialog for listing variants for a single raw bioassay

Implemented extension for displaying the dialog in relation to each VCF file. Note that this duplicates similar functionality that already exists in Reggie so it is recommended that this is disabled on the lorry server and only enabled on relax.

comment:6 by Nicklas Nordborg, 2 years ago

In 6530:

References #1355: Implement dialog for listing variants for a single raw bioassay

Display variants in bold if the list contains mixed variants and genotypes.

comment:7 by Nicklas Nordborg, 2 years ago

Resolution: → fixed
Status: new → closed
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