Version 9 (modified by markus, 16 years ago) ( diff )



BAFsegmentation is a method to identify regions of allelic imbalance from B allele frequencies obtained from SNP arrays described in

Segmentation-based detection of allelic imbalance and loss-of-heterozygosity in cancer cells using whole genome SNP arrays

  1. Staaf, D. Lindgren, J. Vallon-Christersson, A. Isaksson, H. Göransson, G. Juliusson, R. Rosenquist, M. Höglund, Å. Borg, M. Ringnér



The BAFsegmentation software will be available as a stand-alone software package upon acceptance of the paper describing the method, and will become available as as a plug-in to BASE as the handling of SNP arrays in BASE is developed. Both versions are available under the GNU General Public License.

Download BAFsegmentation

The method will be downloadable as a stand-alone version upon acceptance of the submitted manuscript describing BAFsegmentation.

Supplemental Data

  • The plots referred to in additional data file 4 in the manuscript are available here.
  • The simulated data set will be available upon acceptance of the manuscript.


If you have comments please send an email to johan.staaf@…

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