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BAFsegmentation
BAFsegmentation is a method to identify regions of allelic imbalance from B allele frequencies obtained from SNP arrays described in
Segmentation-based detection of allelic imbalance and loss-of-heterozygosity in cancer cells using whole genome SNP arrays
- Staaf, D. Lindgren, J. Vallon-Christersson, A. Isaksson, H. Göransson, G. Juliusson, R. Rosenquist, M. Höglund, Å. Borg, M. Ringnér
Genome Biology 9:R136 (2008)
Abstract
License
The BAFsegmentation software will be available as a stand-alone software package upon acceptance of the paper describing the method, and will become available as as a plug-in to BASE as the handling of SNP arrays in BASE is developed. Both versions are available under the GNU General Public License.
Download BAFsegmentation
The method will be downloadable as a stand-alone version soon.
Supplemental Data
- The plots referred to in additional data file 4 in the manuscript are available here.
- The simulated data set will be available soon.
Contact
If you have comments please send an email to johan.staaf@…
Attachments (5)
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BAFsegmentation-2.0pre-snapshot111209.zip
(20.5 MB
) - added by 3 years ago.
BAFsegmentation 2.0pre-snapshot 111209
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BAFsegmentation-1.2.0.zip
(2.3 MB
) - added by 3 years ago.
BAFsegmentation 1.2.0
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CRL2324_dilutionSeries_TableExport.zip
(74.9 MB
) - added by 3 years ago.
CRL2324 dilutionSeries TableExport
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CRL2324_dilutionSeries_BeadStudio.zip
(54.9 MB
) - added by 3 years ago.
CRL2324 dilutionSeries BeadStudio
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SimulatedTumorData.zip
(220.4 MB
) - added by 3 years ago.
Simulated Tumor Data
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