Changes between Version 4 and Version 5 of net.sf.basedb.illumina


Ignore:
Timestamp:
Mar 13, 2008, 9:55:36 AM (14 years ago)
Author:
Nicklas Nordborg
Comment:

Update information with SNP plug-ins

Legend:

Unmodified
Added
Removed
Modified
  • net.sf.basedb.illumina

    v4 v5  
    22
    33This package contains plug-ins for the Illumina platform. The plug-ins require BASE 2.6.0 or later
    4 and that you have data in the form of Illumina Bead Summary (IBS) and Illumina Sentrix® Array binary manifest (BGX) files. Currently, the plug-ins in this package are:
     4and that you have data in the form of either:
    55
     6 * For expression experiments: Illumina Bead Summary (IBS) and Illumina Sentrix® Array binary manifest (BGX) files.
     7 * For SNP experiments: Illumina SNP manifest files in CSV format, Illumina SNP raw data files from BeadStudio.
     8
     9Expression data plug-ins in this package:
    610 * BGX reporter importer: Import reporter annotations from BGX files
    711 * BGX feature importer: Create array designs from BGX files
    812 * Bead summary importer: Import Illumina Bead Summary files as raw bioassay data
    913
    10 [source:/plugins/base2/net.sf.basedb.illumina/trunk/README README] contains general information about the plug-ins and hints on how to use them.
     14SNP data plugins in this package:
     15 * SNP reporter importer: Import reporter annotations from SNP manifest files
     16 * SNP raw data importer: Creates raw bioassays from SNP raw data files
     17 * SNP intensity calculator: Extracts data from the raw data files and stores it as a root bioassayset in BASE
    1118
    1219[source:/plugins/base2/net.sf.basedb.illumina/trunk/INSTALL INSTALL] describes how to install the plug-in package. It is important that you read this document. The plug-ins require additional raw data tables and reporter annotation columns in the database before they can be used.
     20
     21[source:/plugins/base2/net.sf.basedb.illumina/trunk/README README] contains general information about the plug-ins and specific information for expressions experiments.
     22
     23[source:/plugins/base2/net.sf.basedb.illumina/trunk/README_SNP README_SNP] contains specific information for SNP experiments.
     24
    1325
    1426= License =