Changes between Version 4 and Version 5 of net.sf.basedb.illumina

Timestamp:

Mar 13, 2008, 9:55:36 AM (17 years ago)

Author:

Nicklas Nordborg

Comment:

Update information with SNP plug-ins

net.sf.basedb.illumina

@@ -2 +2 @@
 
 This package contains plug-ins for the Illumina platform. The plug-ins require BASE 2.6.0 or later
-and that you have data in the form of Illumina Bead Summary (IBS) and Illumina Sentrix® Array binary manifest (BGX) files. Currently, the plug-ins in this package are:
+and that you have data in the form of either:
 
+ * For expression experiments: Illumina Bead Summary (IBS) and Illumina Sentrix® Array binary manifest (BGX) files. 
+ * For SNP experiments: Illumina SNP manifest files in CSV format, Illumina SNP raw data files from BeadStudio.
+
+Expression data plug-ins in this package:
  * BGX reporter importer: Import reporter annotations from BGX files
  * BGX feature importer: Create array designs from BGX files
  * Bead summary importer: Import Illumina Bead Summary files as raw bioassay data
 
-[source:/plugins/base2/net.sf.basedb.illumina/trunk/README README] contains general information about the plug-ins and hints on how to use them.
+SNP data plugins in this package:
+ * SNP reporter importer: Import reporter annotations from SNP manifest files
+ * SNP raw data importer: Creates raw bioassays from SNP raw data files
+ * SNP intensity calculator: Extracts data from the raw data files and stores it as a root bioassayset in BASE
 
 [source:/plugins/base2/net.sf.basedb.illumina/trunk/INSTALL INSTALL] describes how to install the plug-in package. It is important that you read this document. The plug-ins require additional raw data tables and reporter annotation columns in the database before they can be used.
+
+[source:/plugins/base2/net.sf.basedb.illumina/trunk/README README] contains general information about the plug-ins and specific information for expressions experiments.
+
+[source:/plugins/base2/net.sf.basedb.illumina/trunk/README_SNP README_SNP] contains specific information for SNP experiments.
+
 
 = License =