Timeline
Sep 15, 2021:
- 1:53 PM Changeset [6392] by
- References #1323: Genotype targeted variants Default configuration …
- 11:17 AM Changeset [6391] by
- References #1323: Genotype targeted variants Add link to a dialog in …
- 9:22 AM Changeset [6390] by
- References #1323: Genotype targeted variants The link to the dialog …
- 9:17 AM Changeset [6389] by
- References #1323: Genotype targeted variants Updating @since …
- 9:14 AM Changeset [6388] by
- References #1323: Genotype targeted variants Added …
- 8:30 AM Changeset [6387] by
- References #1323: Genotype targeted variants Merge all changes to the …
- 8:27 AM Changeset [6386] by
- References #1323: Genotype targeted variants Genotype VCF files …
- 8:27 AM Changeset [6385] by
- 8:22 AM Changeset [6384] by
- References #1323: Genotype targeted variants Ignore some effects from …
- 8:19 AM Ticket #1326 (Some SnpEff effects should be ignored) closed by
- fixed: In 6383: […]
- 8:18 AM Changeset [6383] by
- Fixes #1326: Some SnpEff? effects should be ignored
- 8:16 AM Ticket #1326 (Some SnpEff effects should be ignored) created by
- The ANN field that is created by SnpEff can be a large table with …
Sep 14, 2021:
- 2:46 PM Changeset [6382] by
- References #1323: Genotype targeted variants Skip 'p.?' when …
- 2:11 PM Changeset [6381] by
- References #1324: Implement support for indexing VCF files from the …
- 8:51 AM Changeset [6380] by
- References #1324: Implement support for indexing VCF files from the …
- 8:33 AM Changeset [6379] by
- References #1324: Implement support for indexing VCF files from the …
Sep 10, 2021:
- 2:11 PM net.sf.basedb.reggie/notes432 edited by
- (diff)
- 2:09 PM Ticket #1325 (Calculating the average fragment size needs fixing due to Hisat bug) closed by
- fixed: In 6378: […]
- 2:09 PM Changeset [6378] by
- Fixes #1325: Calculating the average fragment size needs fixing due to …
- 2:03 PM Ticket #1325 (Calculating the average fragment size needs fixing due to Hisat bug) created by
- It seems that Hisat 2.1 has a bug that in some cases output a negative …
Sep 8, 2021:
- 1:30 PM Changeset [6377] by
- References #1324: Implement support for indexing VCF files from the …
Sep 7, 2021:
- 2:24 PM Changeset [6376] by
- References #1324: Implement support for indexing VCF files from the …
- 12:21 PM Changeset [6375] by
- References #1324: Implement support for indexing VCF files from the …
- 11:23 AM Changeset [6374] by
- References #1324: Implement support for indexing VCF files from the …
- 11:23 AM Changeset [6373] by
- References #1324: Implement support for indexing VCF files from the …
- 9:16 AM Changeset [6372] by
- References #1324: Implement support for indexing VCF files from the …
- 8:58 AM Changeset [6371] by
- References #1324: Implement support for indexing VCF files from the …
- 8:55 AM Ticket #1324 (Implement support for indexing VCF files from the targeted genotyping) created by
- See Reggie ticket #1323. The VCF files should be more or less …
- 8:43 AM Changeset [6370] by
- References #1323: Genotype targeted variants Added auto-confirm …
- 8:43 AM Changeset [6369] by
- References #1323: Genotype targeted variants Added auto-confirm …
Sep 6, 2021:
- 2:42 PM Changeset [6368] by
- References #1323: Genotype targeted variants The "View variant" …
- 9:43 AM Changeset [6367] by
- References #1323: Genotype targeted variants Change to GATK version …
Sep 2, 2021:
- 12:36 PM Changeset [6366] by
- References #1323: Genotype targeted variants Updated the dialog for …
- 9:55 AM Changeset [6365] by
-
References #1323: Genotype targeted variants
Added
TargetedGenotype…
Aug 31, 2021:
- 1:48 PM Changeset [6364] by
- References #1323: Genotype targeted variants Implemented steps for …
Aug 30, 2021:
- 1:47 PM Changeset [6363] by
- References #1323: Genotype targeted variants Added …
- 11:01 AM Changeset [6362] by
- References #1323: Genotype targeted variants Auto-confirmation after …
- 9:34 AM Changeset [6361] by
- References #1323: Genotype targeted variants Result VCF files are now …
Aug 27, 2021:
- 2:10 PM Changeset [6360] by
- References #1323: Genotype targeted variants Added a new section in …
- 10:59 AM Changeset [6359] by
- References #1323: Genotype targeted variants Started with …
Aug 26, 2021:
- 1:26 PM Changeset [6358] by
- References #1323: Genotype targeted variants Started to implement a …
- 1:26 PM Changeset [6357] by
Aug 24, 2021:
- 10:47 AM Changeset [6356] by
- References #1323: Genotype targeted variants Added an item list for …
- 8:17 AM Changeset [6355] by
- Creating a development branch for ticket #1323.
- 7:44 AM Ticket #1323 (Genotype targeted variants) created by
- We should implement an analysis step for genotyping specific variants. …
Aug 19, 2021:
- 8:27 AM Changeset [6354] by
- Merge changes in Reggie branch 4.31-stable after 4.31.3 to the trunk. …
- 8:07 AM net.sf.basedb.reggie/notes432 edited by
- (diff)
Aug 18, 2021:
- 11:19 AM Changeset [6353] by
- References #1295: Registration of specimen handled by external lab …
- 9:00 AM Changeset [6352] by
- References #1295: Registration of specimen handled by external lab …
Aug 17, 2021:
- 1:43 PM Changeset [6351] by
- References #1295: Registration of specimen handled by external lab …
- 1:41 PM Changeset [6350] by
- References #1295: Registration of specimen handled by external lab A …
Aug 16, 2021:
- 1:59 PM net.sf.basedb.reggie/notes432 edited by
- (diff)
- 1:45 PM Ticket #1299 (Import of FASTQ files from external lab) closed by
- fixed
- 1:34 PM Changeset [6349] by
- References #1295: Registration of specimen handled by external lab …
- 1:23 PM Changeset [6348] by
- References #1295: Registration of specimen handled by external lab …
- 11:34 AM Changeset [6347] by
- References #1295: Registration of specimen handled by external lab …
- 11:34 AM Changeset [6346] by
- References #1295: Registration of specimen handled by external lab …
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