Opened 7 years ago

Closed 7 years ago

#953 closed enhancement (fixed)

Remove "unmapped.bam" file from Tophat results

Reported by: Nicklas Nordborg Owned by: Nicklas Nordborg
Priority: major Milestone: Reggie v4.9.3
Component: net.sf.basedb.reggie Keywords:


This file is not used anymore and just takes up space on the disk. This means that we also no longer need the script that is doing something to "to make them compatible with downstream tools (e.g., Picard, samtools or GATK)".

Change History (1)

comment:1 by Nicklas Nordborg, 7 years ago

Resolution: fixed
Status: newclosed

(In [4419]) Fixes #953: Remove "unmapped.bam" file from Tophat results

Remove the part of the script that calls "". The "unmapped.bam" file is not removed until just before copying the result files back to the project archive since the "" script also extract some information from the unmapped.bam file.

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