Opened 7 years ago

Last modified 7 years ago

#939 closed task

Installation wizard for Relax server — at Version 5

Reported by: Nicklas Nordborg Owned by: Nicklas Nordborg
Priority: critical Milestone: Relax v1.0
Component: net.sf.basedb.relax Keywords:
Cc:

Description (last modified by Nicklas Nordborg)

The installation wizard should be similar to the Reggie installation wizard. It must check and create items that are needed for the Relax server to work as intended.

Item subtypes:

  • Patient (biosource)
  • Case (Sample)
  • Specimen (Sample)
  • RNA (Extract)
  • Library (Extract)
  • MergedSequences (Derived bioassay)

From the derived bioassay we go directly to raw bioassay with a relevant raw data type (most likely a file-only data type since we want to avoid importing data to the database).

Raw data types:

  • Cufflinks (if we need to support older releases)
  • Kallisto (for the new pipeline)
  • ... and other raw data type in the future

On each level we also need to define annotation types.

Change History (5)

comment:1 by Nicklas Nordborg, 7 years ago

(In [4350]) References #939: Installation wizard for Relax server

Created the installation servlet but it is only an empty template so far.

comment:2 by Nicklas Nordborg, 7 years ago

(In [4353]) References #939: Installation wizard for Relax server

Added some substypes and implemented installation code for checking/installing them.

comment:3 by Nicklas Nordborg, 7 years ago

(In [4354]) References #939: Installation wizard for Relax server

Added (temporary) menu entry for the installation wizard.

comment:4 by Nicklas Nordborg, 7 years ago

Owner: set to Nicklas Nordborg
Status: new → assigned

comment:5 by Nicklas Nordborg, 7 years ago

Description: modified (diff)
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