Opened 17 years ago

Last modified 17 years ago

#90 closed task

Create array design from a bgx-file — at Version 6

Reported by: Nicklas Nordborg Owned by: Martin Svensson
Priority: critical Milestone: Illumina package v1.0
Component: net.sf.basedb.illumina Keywords:
Cc:

Description (last modified by Martin Svensson)

A bgx file contains array design information for Illumina arrays. The file is a gzip-compressed text file. The file also contains reporter annotations. The information we have so far is:

  • The Probe_Id column should be used as the reporter id.
  • The Array_Address_Id column is the Feature ID. This is the ID that is present in the raw data files. Thus, the array designs must use the FEATURE_ID as the feature identification method.

NOTE! The bgx file has two sections: [Probes] and [Controls]. Data from both sections should be imported.

Import of Reporter annotations is in a separate ticket see ticket#94

Change History (6)

comment:1 by Johan Enell, 17 years ago

Milestone: → Illumina package v1.0

comment:2 by Martin Svensson, 17 years ago

Owner: changed from Johan Enell to Martin Svensson
Status: new → assigned

comment:3 by Martin Svensson, 17 years ago

(In [561]) References #90 The plug-in can now be used to import features to an array design.

comment:4 by Martin Svensson, 17 years ago

(In [563]) References #90 Refine comments and removed some blank lines.

comment:5 by Martin Svensson, 17 years ago

(In [565]) References #90 Added a default plugin configuration to come along with the jar-file and set the auto-installer to know there is configurations to install.

comment:6 by Martin Svensson, 17 years ago

Description: modified (diff)
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