Create array design from a bgx-file

[Nicklas Nordborg]

A bgx file contains array design information for Illumina arrays. The file is a gzip-compressed text file. The file also contains reporter annotations. The information we have so far is:

• The Probe_Id column should be used as the reporter id.
• The Array_Address_Id column is the Feature ID. This is the ID that is present in the raw data files. Thus, the array designs must use the FEATURE_ID as the feature identification method.

NOTE! The bgx file has two sections: [Probes] and [Controls]. Data from both sections should be imported.

Import of Reporter annotations is in a separate ticket see ticket#94

[Martin Svensson]

(In [561]) References #90 The plug-in can now be used to import features to an array design.

[Martin Svensson]

(In [563]) References #90 Refine comments and removed some blank lines.

[Martin Svensson]

(In [565]) References #90 Added a default plugin configuration to come along with the jar-file and set the auto-installer to know there is configurations to install.

[Martin Svensson]

(In [578]) Fixes #90 Create array design from a bgx-file.

[Nicklas Nordborg]

(In [581]) References #90: Create array design from a bgx-file

Fixed missing spaces in about text.