Opened 8 years ago

Closed 8 years ago

#824 closed enhancement (fixed)

fix_tophat_unmapped_reads.py has been renamed to tophat-recondition.py

Reported by: Nicklas Nordborg Owned by: Nicklas Nordborg
Priority: minor Milestone: Reggie v4.0
Component: net.sf.basedb.reggie Keywords:
Cc:

Description

The fix_tophat_unmapped_reads.py script is used in the alignment step. It has been updated to a new version and has been renamed to tophat-recondition.py. It also requires some different parameters: 

# Old call
fix_tophat_unmapped_reads.py <folder>

# New call
tophat-recondition.py -l /dev/null -q <folder>

Change History (4)

comment:1 by Jari Häkkinen, 8 years ago

The old script was replaced the new in ​http://baseplugins.thep.lu.se/browser/other/pipeline/trunk?rev=3586

comment:2 by Nicklas Nordborg, 8 years ago

Milestone: Reggie v3.8 → Reggie v4.0

Milestone renamed

comment:3 by Nicklas Nordborg, 8 years ago

Status: new → assigned

comment:4 by Nicklas Nordborg, 8 years ago

Resolution: → fixed
Status: assigned → closed

(In [3611]) Fixes #824: fix_tophat_unmapped_reads.py has been renamed to tophat-recondition.py

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