Opened 8 years ago
Closed 8 years ago
#824 closed enhancement (fixed)
fix_tophat_unmapped_reads.py has been renamed to tophat-recondition.py
Reported by: | Nicklas Nordborg | Owned by: | Nicklas Nordborg |
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Priority: | minor | Milestone: | Reggie v4.0 |
Component: | net.sf.basedb.reggie | Keywords: | |
Cc: |
Description
The fix_tophat_unmapped_reads.py
script is used in the alignment step. It has been updated to a new version and has been renamed to tophat-recondition.py
. It also requires some different parameters:
# Old call fix_tophat_unmapped_reads.py <folder> # New call tophat-recondition.py -l /dev/null -q <folder>
Change History (4)
comment:1 Changed 8 years ago by
comment:3 Changed 8 years ago by
Status: | new → assigned |
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comment:4 Changed 8 years ago by
Resolution: | → fixed |
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Status: | assigned → closed |
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The old script was replaced the new in http://baseplugins.thep.lu.se/browser/other/pipeline/trunk?rev=3586