Opened 17 years ago

Closed 17 years ago

#66 closed defect (worksforme)

The plier and rmaexpress plug-ins should make an graceous exit when the underlying binary is missing

Reported by: Jari Häkkinen Owned by: Jari Häkkinen
Priority: major Milestone:
Component: se.lu.thep.affymetrix Keywords:
Cc:

Description (last modified by Jari Häkkinen)

In 0.6 the plugin will exit with a stack trace like this: 

45,968  WARN DbControl:1046 - Found unclosed DbControl during finalize; isLoggedIn = true; clientId = 0; userId = 3
ang.Throwable: Please check the code to make sure that DbControl.close() is always called. Stacktrace of code that created t
Control:
at net.sf.basedb.core.DbControl.<init>(DbControl.java:140)
at net.sf.basedb.core.SessionControl.newDbControl(SessionControl.java:260)
at se.lu.thep.affymetrix.Plier.getAPTPath(Plier.java:253)
at se.lu.thep.affymetrix.Plier.runPlier(Plier.java:354)
at se.lu.thep.affymetrix.Plier.run(Plier.java:310)
at net.sf.basedb.core.PluginExecutionRequest.invoke(PluginExecutionRequest.java:88)
at net.sf.basedb.core.InternalJobQueue$JobRunner.run(InternalJobQueue.java:420)
at java.lang.Thread.run(Thread.java:595)

Change History (2)

comment:1 by Jari Häkkinen, 17 years ago

Description: modified (diff)
Status: new → assigned

comment:2 by Jari Häkkinen, 17 years ago

Resolution: → worksforme
Status: assigned → closed

On the trunk heading towards BASE 2.4 and the latest version of the affymetrix plug-in package this already works.

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