Opened 10 years ago
Closed 10 years ago
#659 closed enhancement (fixed)
Do not trust fragement size calculated by bowtie if number of used fragments is too low
| Reported by: | Nicklas Nordborg | Owned by: | Nicklas Nordborg |
|---|---|---|---|
| Priority: | major | Milestone: | Reggie v2.16.1 |
| Component: | net.sf.basedb.reggie | Keywords: | |
| Cc: |
Description
The FragmentSizeAvg and FragmentSizeStd should be set to -1 if the number of fragments is less than 20000
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(In [2791]) Fixes #659: Do not trust fragement size calculated by bowtie if number of used fragments is too low
Added configuration option
<bowtie-fragment-count-limit>(default 20000) which is used to check the fragments size values.