Changes between Initial Version and Version 5 of Ticket #472


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Timestamp:
Mar 19, 2013, 8:24:57 AM (12 years ago)
Author:
Nicklas Nordborg
Comment:

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  • Ticket #472

    • Property Status new → assigned

  • Ticket #472 – Description

    initial v5  
    11Caliper and Qubit are used for quality control and measuring concentrations, fragment lengths, etc. Since we need to import data as annotations later, we'll probably want some files to feed the other software.
    22
    3 Files for the Caliper are probably similar to what is produced for RNAQC (see #365, #366 and #370).
     3The following files are needed:
     4
     5 * Sample name CSV for Caliper
     6 * Run parameters for Caliper
     7 * Sample names for Qubit (manually edited)
     8
     9Files for the Caliper are probably similar to what is produced for RNAQC (see #365, #366 and #370). Settings are different and we need two variants. Once variant when 96-well plates are used and one variant when 384-well plates are used. In the latter case coordinates should be re-mapped to only use every other well (eg. 1, 3, 5, A, C, E, etc).
     10
     11Since the Qubit doesn't have much support for files, the file generated for Qubit is a template that is manually filled in and uploaded to BASE after all extracts have been processed.