Opened 15 years ago

Closed 15 years ago

#40 closed enhancement (fixed)

Create virtual bioassay containing analysis results

Reported by: johan Owned by: Johan Enell
Priority: major Milestone:
Component: se.lu.onk.ztest Keywords: visualization
Cc:

Description

The results from running the Z-test analysis can be viewed as a table of reporters and associated information of two types, A) reporter annotations, and B) calculated analysis output. A convenient way of presenting this data as a table would be as a virtual bioassay that the plugin creates in base. Two things would be accomplished by doing this, A) all reporter annotation data would automatically be made available through the general base interface, and B) the data table could be sorted, filtered, and integrated in base using available base interface. The current file based output that should be kept. In addition, implement the virtual bioassay functionality by: Creating a basefile as part of the output that contain a bioassay with a name specified by a plugin parameter or have the name be the job ID. Create int1 and int2 so that M = the Average M (present in the current file output). Store additional output, i.e., P, Number of values, Rank, Expected, and FDR as set extra floats.

Change History (2)

comment:1 Changed 15 years ago by Johan Enell

Status: newassigned

The plug-in will need the A value for each spot. The new "merged" spot will have a average M and a average A.

comment:2 Changed 15 years ago by Johan Enell

Resolution: fixed
Status: assignedclosed

(In [221]) Fixes #40

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