Opened 13 years ago
Closed 12 years ago
#371 closed task (fixed)
Wizard that move histology samples to paraffin blocks
Reported by: | Nicklas Nordborg | Owned by: | Nicklas Nordborg |
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Priority: | critical | Milestone: | Reggie v2.7 |
Component: | net.sf.basedb.reggie | Keywords: | |
Cc: |
Description (last modified by ) ¶
We need a couple of histology processing wizards. The current samples are stored in temporary bioplates (HisNNNN). The bioplates are currently a "generic storage" type, but this should manually be changed to a "Histology" box type (9x9 geometry).
This wizard should allow the operator to select an existing histology box existing Histology items and move the biomaterial to new 3x2 "Paraffin block" bioplates. The list with existing Histology items should only include those without a creation date and it should be sorted by bioplate and position. The biomaterial is automatically moved row-by-row to the paraffin blocks in the order: C1, B1, A1, C2, B2. The A2 position is left empty. The wizard should create full paraffin blocks only. Remaining items should be left in the original box.
The wizard should also set the creation date, protocol, and other properties related to the embedding.
Paraffin blocks should be autonamed using a prefix and running number: PB000001, etc.
Change History (12)
comment:1 by , 13 years ago
Milestone: | → Reggie v2.5 |
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Status: | new → assigned |
comment:2 by , 13 years ago
comment:3 by , 13 years ago
Milestone: | Reggie v2.5 → Reggie v2.7 |
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comment:4 by , 13 years ago
comment:5 by , 13 years ago
comment:6 by , 13 years ago
comment:7 by , 13 years ago
Description: | modified (diff) |
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comment:8 by , 13 years ago
comment:9 by , 13 years ago
(In [1684]) References #371 and #372. Create (empty) paraffin block plates at the same time as the work lists are created otherwise the plate names on the lab tracking protocol may not match plate names that would have been generated by the registration wizard.
The registration wizard can now select a protocol (Histology subtype).
comment:10 by , 13 years ago
comment:11 by , 13 years ago
comment:12 by , 12 years ago
Resolution: | → fixed |
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Status: | assigned → closed |
Closing this so that 2.7 can be released. If changes/fixes are needed, new tickets should be created.
(In [1589]) References #371: Wizard that move histology samples to paraffin blocks
First version of the wizard. It should do most of what is needed already.
Installation wizard is creating/checking a few more items that are needed.
Added text file with test data.
The wizard need to store creation date on bioplates which means that BASE 3.1 is needed.