Bead summary importer should have an option to fail if the number of skipped data lines get too high
|Reported by:||Nicklas Nordborg||Owned by:||Nicklas Nordborg|
|Priority:||major||Milestone:||Illumina package v1.4|
The current implementation only allows a user to fail on the first "bad" line or to skip all bad lines. In some cases a small amount of "bad" lines are expected. But a larger amount may indicate a problem. See http://email@example.com/msg01795.html for some background information.
We should add an extra option (smart?) to the "Probe not found" error handler and an extra parameter that allows the user to specify a percentage or an absolute value for the maximum number of data lines to skip. If more lines with "Probe not found" are found, the plug-in should fail. The "smart" option should probably be the default selection and 5% has been suggested as the default for the threshold value.